TkA01G000690 | RubberDandelionOmics

Gene overview

TkA01G000690

Reference: TK1151 Chr: Chr01 Coordinates: 158760-160154 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1167 bp · TkA01G000690|TK1151|cDNA

ATGGAAAGATACGAATTAGGTAGATTACTAGGCCAAGGAACCTTCGGAAAAGTATACTACGGTAGAAACACACAAACAGGCCAAGGTGTAGCCATTAAAGTAATAGACAAAGAGAAAGTTCTAAAAGTCGGCCTAATCAACCAAATCAAGCGAGAAATCTCCATAATGAGAATGGTGAAACACCCCTACATTCTCGAACTCTACGAAGTCATGGCCACAAAAACCAAAATATACTTCGCGTTAGAATACGCAAAAGGCGG...

CDS

Download CDS FASTA

1167 bp · TkA01G000690|TK1151|CDS

ATGGAAAGATACGAATTAGGTAGATTACTAGGCCAAGGAACCTTCGGAAAAGTATACTACGGTAGAAACACACAAACAGGCCAAGGTGTAGCCATTAAAGTAATAGACAAAGAGAAAGTTCTAAAAGTCGGCCTAATCAACCAAATCAAGCGAGAAATCTCCATAATGAGAATGGTGAAACACCCCTACATTCTCGAACTCTACGAAGTCATGGCCACAAAAACCAAAATATACTTCGCGTTAGAATACGCAAAAGGCGG...

Protein

Download Protein FASTA

388 aa · TkA01G000690|TK1151|PROTEIN

MERYELGRLLGQGTFGKVYYGRNTQTGQGVAIKVIDKEKVLKVGLINQIKREISIMRMVKHPYILELYEVMATKTKIYFALEYAKGGELFDKVSKGKLKENIARRYFQQLITAVDFCHSRGVYHRDLKPENLLLDENDNLKVSDFGLSALAESKHSDGLLHTTCGTPAYVAPEVINRKGYYGDKADIWSCGVILFVLLTGYLPFHDSNLMELYRKIGKADFKCPNWFPSDVKRLLTRMLEPNPVYRITITKVKENPWFKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G000690`
TK1151 ID	TkA01G000690
OH-1004 ID	LXL04_036633
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	82.200
Protein coverage (%)	TK1151 95.103 / OH-1004 85.221 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G000690

Location Chr01:158760-160154 (+)

Description Similar to CIPK10: CBL-interacting serine/threonine-protein kinase 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07070`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`At5g58380`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`At5g45820`	CIPK serine-threonine protein kinases interact with CBL proteins.	Constitutive activation and transgenic evaluation of the function of an arabidopsis PKS protein kinase.2002 · DOI: 10.1074/jbc.m205504200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0678600`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0332300`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036633 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G07070

ath:AT5G58380

dosa:Os01g0206700

dosa:Os05g0332300

dosa:Os07g0678600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.528

Rank 1 · TkA01G000690 · TK1151

Nucleus0.465

Rank 2 · TkA01G000690 · TK1151

Cell membrane0.152

Rank 3 · TkA01G000690 · TK1151

Endoplasmic reticulum0.054

Rank 4 · TkA01G000690 · TK1151

Mitochondrion0.044

Rank 5 · TkA01G000690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase4-258 aa

PF07714PK_Tyr_Ser-Thr5-254 aa

PF14531Kinase-like7-39 aa

PF03109ABC114-59 aa

PF22038PRC2_EED_ins19-44 aa

PF23772Phage_g10047-66 aa

PF03109ABC176-160 aa

PF14531Kinase-like94-242 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G000690	`PF00069`	Pkinase	4	258	1.4e-76	258.1
TkA01G000690	`PF07714`	PK_Tyr_Ser-Thr	5	254	1.3e-39	136.8
TkA01G000690	`PF14531`	Kinase-like	7	39	6e-08	33.0
TkA01G000690	`PF03109`	ABC1	14	59	6.4e-06	26.2
TkA01G000690	`PF22038`	PRC2_EED_ins	19	44	5.6	7.7
TkA01G000690	`PF23772`	Phage_g100	47	66	0.23	13.3
TkA01G000690	`PF03109`	ABC1	76	160	6.4e-06	26.2
TkA01G000690	`PF14531`	Kinase-like	94	242	6e-08	33.0
TkA01G000690	`PF06293`	Kdo	98	141	0.019	15.1
TkA01G000690	`PF01636`	APH	103	145	0.16	12.5
TkA01G000690	`PF23772`	Phage_g100	248	297	0.23	13.3
TkA01G000690	`PF22038`	PRC2_EED_ins	277	298	5.6	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYQ8`	Arabidopsis thaliana	sp\|Q9LYQ8\|CIPK2_ARATH CBL-interacting serine/threonine-protein kinase 2	58.800%	Swiss-Prot	High
`Q9C562`	Arabidopsis thaliana	sp\|Q9C562\|CIPKA_ARATH CBL-interacting serine/threonine-protein kinase 10	58.100%	Swiss-Prot	High
`Q9FJ54`	Arabidopsis thaliana	sp\|Q9FJ54\|CIPKK_ARATH CBL-interacting serine/threonine-protein kinase 20	57.900%	Swiss-Prot	High
`Q7X996`	Oryza sativa subsp. japonica	sp\|Q7X996\|CIPK2_ORYSJ CBL-interacting protein kinase 2	58.300%	Swiss-Prot	High
`Q5W736`	Oryza sativa subsp. japonica	sp\|Q5W736\|CIPKI_ORYSJ CBL-interacting protein kinase 18	56.600%	Swiss-Prot	High

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