LXL04_039495 | RubberDandelionOmics

Gene overview

LXL04_039495

Reference: OH-1004 Chr: JAJTUU010000012.1 Coordinates: 782148-783874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

507 bp · LXL04_039495|LXL04_039495|OH1004|cDNA

ATGGGGTATTTTGGCACAAAACTACTTGACAGGTCCATTGTCACCTTCCATTGGCAATTTAACTCGGATGATGTACATaacTATCAGCATCAATTCATTATCAGGGCCGGTTCCCCAGAGATAGGACAACTTACCGAACTTAGATTACTATCATTTAGCGGAAACAAATTCAGTGGTTCTCTACCACCTGAAATTGGAAATTTGAGAAGATTAGAACAAATTTACATTGATAGTGCTGGAGTTAGTGGTGCTATACCTTC...

CDS

Download CDS FASTA

507 bp · LXL04_039495|LXL04_039495|OH1004|CDS

ATGGGGTATTTTGGCACAAAACTACTTGACAGGTCCATTGTCACCTTCCATTGGCAATTTAACTCGGATGATGTACATAACTATCAGCATCAATTCATTATCAGGGCCGGTTCCCCAGAGATAGGACAACTTACCGAACTTAGATTACTATCATTTAGCGGAAACAAATTCAGTGGTTCTCTACCACCTGAAATTGGAAATTTGAGAAGATTAGAACAAATTTACATTGATAGTGCTGGAGTTAGTGGTGCTATACCTTC...

Protein

Download Protein FASTA

168 aa · LXL04_039495|LXL04_039495|OH1004|PROTEIN

MGYFGTKLLDRSIVTFHWQFNSDDVHNYQHQFIIRAGSPEIGQLTELRLLSFSGNKFSGSLPPEIGNLRRLEQIYIDSAGVSGAIPSTFANLQNLQTVWASDNEFTGRISDFIGNWSQLQTLRFKGNSFEGSIPPSFSRLTSMLELRISGLSNGTLDFIRDMKSLSVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039495`
TK1151 ID	TkA04G246590
OH-1004 ID	LXL04_039495
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	67.700
Protein coverage (%)	TK1151 100.000 / OH-1004 97.619 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039495

Location JAJTUU010000012.1:782148-783874 (-)

Description Similar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g53440`	Probable LRR receptor-like serine/threonine-protein kinase At1g53440.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At3g14840`	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039495 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G53440

ath:AT1G56130

ath:AT1G56140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.496

Rank 1 · LXL04_039495 · OH-1004

Endoplasmic reticulum0.133

Rank 2 · LXL04_039495 · OH-1004

Cell membrane0.089

Rank 3 · LXL04_039495 · OH-1004

Cytoplasm0.080

Rank 4 · LXL04_039495 · OH-1004

Plastid0.061

Rank 5 · LXL04_039495 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_1440-102 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039495	`PF23598.2`	LRR_14	40	102	1.6e-12	47.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	58.779%	Swiss-Prot	strong database homology
`C0LGH2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	58.015%	Swiss-Prot	strong database homology
`C0LGG9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	43.333%	Swiss-Prot	moderate database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	42.478%	Swiss-Prot	moderate database homology
`C0LGN2`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	41.985%	Swiss-Prot	moderate database homology

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