Gene Card
Gene overview
cDNA / CDS / Protein Sequences
783 bp · LXL04_038831|LXL04_038831|OH1004|cDNA
ATGTATGTAGTTCTAGGTCTTGGACATTTGAATCAGATATCGATTCTATTTTCGAAATCGATTCCATGTTACCCCTTCAATCGATGTGATGTTCGCAGCGATGTCTTCGTATATAAATTGTCCGATGGAAGCCCTATTTTGATTCAGGTTGTCGGCACTATGGCGAGAACGATGAACATAGTAAAAAGTCAATGGCTCGATGGTTTAGGAGATGGCCGCAGAAGTAGGGTCATGATATTCAAGCGCATCAAGACGGGCGC...
783 bp · LXL04_038831|LXL04_038831|OH1004|CDS
ATGTATGTAGTTCTAGGTCTTGGACATTTGAATCAGATATCGATTCTATTTTCGAAATCGATTCCATGTTACCCCTTCAATCGATGTGATGTTCGCAGCGATGTCTTCGTATATAAATTGTCCGATGGAAGCCCTATTTTGATTCAGGTTGTCGGCACTATGGCGAGAACGATGAACATAGTAAAAAGTCAATGGCTCGATGGTTTAGGAGATGGCCGCAGAAGTAGGGTCATGATATTCAAGCGCATCAAGACGGGCGC...
Protein
Download Protein FASTA260 aa · LXL04_038831|LXL04_038831|OH1004|PROTEIN
MYVVLGLGHLNQISILFSKSIPCYPFNRCDVRSDVFVYKLSDGSPILIQVVGTMARTMNIVKSQWLDGLGDGRRSRVMIFKRIKTGAILQMNINGVLCTEPLHYLLKPVKGLNLTGHINFNGVLCTKKRIMTKCEQVWNVFTHLGHYPLVRPSPKLPAALFHLFHNCYSQQPKPHPIKFRVAEHLVDMLVHYNQVLEVKIRSSYLLFFVLYSDFAESTSSIIPTVPKSGSGAQNRNQEEAEEAGAFPFLFSSVALMIFDI
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038831 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038831 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:51560342-51565577 (+) | |||||||||
| Description | Similar to UBP13: Ubiquitin carboxyl-terminal hydrolase 13 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0009867 jasmonic acid mediated signaling pathway Biological Process GO:0010078 maintenance of root meristem identity Biological Process GO:0016579 protein deubiquitination Biological Process GO:0031647 regulation of protein stability Biological Process GO:0070646 protein modification by small protein removal Biological Process GO:2000280 regulation of root development Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009506 plasmodesma Cellular Component GO:0004843 cysteine-type deubiquitinase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G11910 ath:AT5G06600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.