Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1290 bp · LXL04_038734|LXL04_038734|OH1004|cDNA
ATGAGCATATACACGAAAACTTCCGTCCAAAAACTCATTTATAACTACCACCGCCGTCCTCCACCGTCCCATCCTTCTCCGATGGCAACTTCACTTTCCAATTCCACCCTCTTCCACCGTCCTCCCTTTAACCCTAACCCGAACTCCACCACCACCCTCTTTCGACACCCTCCAGCTATACAATTTTCCATAAAAGCCACCTCAAAAGACCCAAACAACATAACCACTCCCGAGCAACCGCCATTGACATCACCGTCGGA...
1290 bp · LXL04_038734|LXL04_038734|OH1004|CDS
ATGAGCATATACACGAAAACTTCCGTCCAAAAACTCATTTATAACTACCACCGCCGTCCTCCACCGTCCCATCCTTCTCCGATGGCAACTTCACTTTCCAATTCCACCCTCTTCCACCGTCCTCCCTTTAACCCTAACCCGAACTCCACCACCACCCTCTTTCGACACCCTCCAGCTATACAATTTTCCATAAAAGCCACCTCAAAAGACCCAAACAACATAACCACTCCCGAGCAACCGCCATTGACATCACCGTCGGA...
Protein
Download Protein FASTA429 aa · LXL04_038734|LXL04_038734|OH1004|PROTEIN
MSIYTKTSVQKLIYNYHRRPPPSHPSPMATSLSNSTLFHRPPFNPNPNSTTTLFRHPPAIQFSIKATSKDPNNITTPEQPPLTSPSEKRSFAVATGELFLGIASRIIKNRNAMERGLDSKEKVLMFGEELGGKKESYFWSRSSNRKEPKEEEIAAVVDDGDVVWEQRLKDVEAERDRKAVTSPGFSFSAAGLLFPYHLGVAKFLIEKGYIKDTTPLAGSSAGAIVCAVVASGASMEEALQATKILAHDCRSRGTAFRLGA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038734 |
|---|---|
| TK1151 ID | TkA04G460210 |
| OH-1004 ID | LXL04_038734 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038734 |
|---|---|
| Location | Chr09:49142060-49143985 (+) |
| Description | Similar to PNPLA4: Patatin-like phospholipase domain-containing protein 4 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001523 retinoid metabolic process Biological Process GO:0001676 long-chain fatty acid metabolic process Biological Process GO:0006650 glycerophospholipid metabolic process Biological Process GO:0006651 diacylglycerol biosynthetic process Biological Process GO:0006654 phosphatidic acid biosynthetic process Biological Process GO:0009744 response to sucrose Biological Process GO:0010891 negative regulation of triglyceride storage Biological Process GO:0010898 positive regulation of triglyceride catabolic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0019432 triglyceride biosynthetic process Biological Process GO:0019433 triglyceride catabolic process Biological Process GO:0019915 lipid storage Biological Process |
| KEGG gene cross-reference | bta:508493 hsa:80339 hsa:8228 mmu:66853 rno:361676 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01734.28Patatin186-347 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038734 | PF01734.28 | Patatin | 186 | 347 | 6.7e-19 | 69.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.