LXL04_038057 | RubberDandelionOmics

Gene overview

LXL04_038057

Reference: OH-1004 Chr: Chr09 Coordinates: 30420267-30423578 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1026 bp · LXL04_038057|LXL04_038057|OH1004|cDNA

ATGATTGAAGCTCTTCCCATCGATTGCAGTGATTTCTTCACCATTCTGAATCGAGCCTGTGGATATTTACCCATTTCTGTTTCAGGCCTCTTTACTCTCAAAAACCACAAACAAGGGATGTGGGTAGTCGGAAAGAGTGGAGGGACGAAGATCAAACCTTCGTTTGATGAAGAATTCGAAGCCGAAATCAAGATGACAGACACTTTCGATCGTGATGACAATAACGATTTTGTTGCATCCAGACACGAGTGCTTTAAGGA...

CDS

Download CDS FASTA

1026 bp · LXL04_038057|LXL04_038057|OH1004|CDS

ATGATTGAAGCTCTTCCCATCGATTGCAGTGATTTCTTCACCATTCTGAATCGAGCCTGTGGATATTTACCCATTTCTGTTTCAGGCCTCTTTACTCTCAAAAACCACAAACAAGGGATGTGGGTAGTCGGAAAGAGTGGAGGGACGAAGATCAAACCTTCGTTTGATGAAGAATTCGAAGCCGAAATCAAGATGACAGACACTTTCGATCGTGATGACAATAACGATTTTGTTGCATCCAGACACGAGTGCTTTAAGGA...

Protein

Download Protein FASTA

341 aa · LXL04_038057|LXL04_038057|OH1004|PROTEIN

MIEALPIDCSDFFTILNRACGYLPISVSGLFTLKNHKQGMWVVGKSGGTKIKPSFDEEFEAEIKMTDTFDRDDNNDFVASRHECFKDVFFNSTLVIRIQICFYHEFKFSSLEINGAYGFFYCWGILDSFNRTIVYGYDRVYGYNSTTKQIYDEGVKTIALSVLNGINSSVFAYGQTSNGKTYTMYGITELAIADIYDYINRHNDREFVLNFSAIEIYNECVKDLLSVDNTQLRLLDDPEKGTVVEKLTEANLRDCNNLKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038057`
TK1151 ID	TkA01G307500
OH-1004 ID	LXL04_038057
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038057

Location Chr09:30420267-30423578 (-)

Description Similar to KIN7J: Kinesin-like protein KIN-7J

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51150`	Kinesin-like protein KIN-7G.	No verified direct reference in this release
`At2g21300`	Kinesin-like protein KIN-7E.	No verified direct reference in this release
`At5g66310`	Kinesin-like protein KIN-7H.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0528000`	Kinesin-like protein KIN-7J.	No verified direct reference in this release
`Os08g0547500`	Kinesin-like protein KIN-7H.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038057 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT2G21300

ath:AT3G51150

ath:AT5G66310

dosa:Os08g0547500

dosa:Os09g0528000

osa:4347645

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545

Rank 1 · LXL04_038057 · OH-1004

Nucleus0.315

Rank 2 · LXL04_038057 · OH-1004

Mitochondrion0.126

Rank 3 · LXL04_038057 · OH-1004

Cell membrane0.076

Rank 4 · LXL04_038057 · OH-1004

Golgi apparatus0.057

Rank 5 · LXL04_038057 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225.30Kinesin130-287 aa

PF16796.12Microtub_bd134-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038057	`PF00225.30`	Kinesin	130	287	1.7e-42	146.3
LXL04_038057	`PF16796.12`	Microtub_bd	134	225	1.1e-16	61.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4J394`	Arabidopsis thaliana	Kinesin-like protein KIN-7G	59.777%	Swiss-Prot	moderate database homology
`F4IGL2`	Arabidopsis thaliana	Kinesin-like protein KIN-7E	63.190%	Swiss-Prot	weak database homology
`F4JZ68`	Arabidopsis thaliana	Kinesin-like protein KIN-7H	61.350%	Swiss-Prot	weak database homology
`Q651Z7`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7J	63.953%	Swiss-Prot	moderate database homology
`Q6Z9D2`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7H	63.006%	Swiss-Prot	moderate database homology

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