LXL04_037366 | RubberDandelionOmics

Gene overview

LXL04_037366

Reference: OH-1004 Chr: Chr09 Coordinates: 8250989-8252275 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1287 bp · LXL04_037366|LXL04_037366|OH1004|cDNA

ATGGACTGGAAAAGAGGTCCCGTCATCGGCCGTGGTTCCTCCGCCACCGTCTCTCTCGCCACCACCGCTACCGGAGACCTCTTCGCTGTTAAATCCGTCGAGGTTTCGAGTTCGCGGTTGTTACAGAAAGAGCACGAGCTTCTTTCTAAATTGAAGTCTCCTCATGTTATCAAATACATCGGGTTTGATGTTGATTATTGCGAAAATATTCCGATGTTTAATTTATTCATTGAGTATGCGGCTAATGGCACGATTTCCGA...

CDS

Download CDS FASTA

1287 bp · LXL04_037366|LXL04_037366|OH1004|CDS

ATGGACTGGAAAAGAGGTCCCGTCATCGGCCGTGGTTCCTCCGCCACCGTCTCTCTCGCCACCACCGCTACCGGAGACCTCTTCGCTGTTAAATCCGTCGAGGTTTCGAGTTCGCGGTTGTTACAGAAAGAGCACGAGCTTCTTTCTAAATTGAAGTCTCCTCATGTTATCAAATACATCGGGTTTGATGTTGATTATTGCGAAAATATTCCGATGTTTAATTTATTCATTGAGTATGCGGCTAATGGCACGATTTCCGA...

Protein

Download Protein FASTA

428 aa · LXL04_037366|LXL04_037366|OH1004|PROTEIN

MDWKRGPVIGRGSSATVSLATTATGDLFAVKSVEVSSSRLLQKEHELLSKLKSPHVIKYIGFDVDYCENIPMFNLFIEYAANGTISDVIKEQGGSLDEGLIRLYTRQILLGLDYLHSNNVVHCDIKCENVLVANDGVKICDLGCAKVVENGGDACSVFSGTPVFMAPEVARGEEQGFAADVWALGCAVIEMGTGCNPWPEVNNPVSALYRIGYSGDVPLFPTWLSVEAQDFLNKCLRTNADERWTAKELLQHPFVDLESY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037366`
TK1151 ID	TkA04G288620
OH-1004 ID	LXL04_037366
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 61.682 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037366

Location Chr09:8250989-8252275 (-)

Description Similar to MAPKKK17: Mitogen-activated protein kinase kinase kinase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32510`	Component of the abscisic acid (ABA) signaling pathway that may act as ABA signal transducer in the context of abiotic stresses.	No verified direct reference in this release
`At1g05100`	Component of the abscisic acid (ABA) signaling pathway that acts as ABA signal transducer in the context of abiotic stresses.	An abscisic acid inducible Arabidopsis MAPKKK, MAPKKK18 regulates leaf senescence via its kinase activity.2015 · DOI: 10.1007/s11103-015-0295-0 Arabidopsis ABA-Activated Kinase MAPKKK18 is Regulated by Protein Phosphatase 2C ABI1 and the Ubiquitin-Proteasome Pathway.2015 · DOI: 10.1093/pcp/pcv146
`At3g50310`	Mitogen-activated protein kinase kinase (MAPKK) that phosphorylates both MKK3 and MPK18 and regulate two separate signaling pathways involved in root microtubule functions.	Arabidopsis MKKK20 is involved in osmotic stress response via regulation of MPK6 activity.2012 · DOI: 10.1007/s00299-011-1157-0 AIK1, A Mitogen-Activated Protein Kinase, Modulates Abscisic Acid Responses through the MKK5-MPK6 Kinase Cascade.2017 · DOI: 10.1104/pp.16.01386 The Arabidopsis Mitogen-Activated Protein Kinase Kinase Kinase 20 (MKKK20) Acts Upstream of MKK3 and MPK18 in Two Separate Signaling Pathways Involved in Root Microtubule Functions.2017 · DOI: 10.3389/fpls.2017.01352

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037366 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0000919 cell plate assembly Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009653 anatomical structure morphogenesis Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G05100

ath:AT2G32510

ath:AT3G50310

ddi:DDB_G0283265

nta:107796336

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.511

Rank 1 · LXL04_037366 · OH-1004

Cytoplasm0.504

Rank 2 · LXL04_037366 · OH-1004

Cell membrane0.099

Rank 3 · LXL04_037366 · OH-1004

Plastid0.054

Rank 4 · LXL04_037366 · OH-1004

Endoplasmic reticulum0.054

Rank 5 · LXL04_037366 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase5-255 aa

PF07714.24PK_Tyr_Ser-Thr8-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037366	`PF00069.32`	Pkinase	5	255	2e-56	192.0
LXL04_037366	`PF07714.24`	PK_Tyr_Ser-Thr	8	251	4.4e-30	105.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80888`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 17	48.097%	Swiss-Prot	moderate database homology
`Q9ZVP5`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 18	48.475%	Swiss-Prot	moderate database homology
`Q9SND6`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 20	38.483%	Swiss-Prot	moderate database homology

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