LXL04_037234 | RubberDandelionOmics

Gene overview

LXL04_037234

Reference: OH-1004 Chr: Chr09 Coordinates: 3800102-3800701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

600 bp · LXL04_037234|LXL04_037234|OH1004|cDNA

ATGCAGTCTTCTACGCCGCCGACCACCTACACCACCATTCCAATCTCCGGCACCGACGTCATTTTCCGATCATTTCAGAATCTCTCCTCCTTCCTATCCCTCCACCGTCCCTGGTCTGAGTTCATCTCCGGTTGCAGCTCATTCGACAGACCAGACTCACTCAACCACACCGCCACCAGACTCGGCGTCAACTCCAAATACTTCGGCGTGAACTACGGCATTATCGTCACCATTTGCGCCGCCGTATCCTTAATCGGAGA...

CDS

Download CDS FASTA

600 bp · LXL04_037234|LXL04_037234|OH1004|CDS

ATGCAGTCTTCTACGCCGCCGACCACCTACACCACCATTCCAATCTCCGGCACCGACGTCATTTTCCGATCATTTCAGAATCTCTCCTCCTTCCTATCCCTCCACCGTCCCTGGTCTGAGTTCATCTCCGGTTGCAGCTCATTCGACAGACCAGACTCACTCAACCACACCGCCACCAGACTCGGCGTCAACTCCAAATACTTCGGCGTGAACTACGGCATTATCGTCACCATTTGCGCCGCCGTATCCTTAATCGGAGA...

Protein

Download Protein FASTA

199 aa · LXL04_037234|LXL04_037234|OH1004|PROTEIN

MQSSTPPTTYTTIPISGTDVIFRSFQNLSSFLSLHRPWSEFISGCSSFDRPDSLNHTATRLGVNSKYFGVNYGIIVTICAAVSLIGDPTTLLIFASVFTLWLVLYFFREDPMVVWGHHVHDHLVTAALVLVTGVSIWIRGFVTSALIGIAVGILLSVVHGVFRNSQGIYLDENDAASDGLISPPLVSPRDYKANLTFSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037234`
TK1151 ID	TkA04G262770
OH-1004 ID	LXL04_037234
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	97.100
Protein coverage (%)	TK1151 81.065 / OH-1004 69.347 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037234

Location Chr09:3800102-3800701 (+)

Description Similar to PRA1G2: PRA1 family protein G2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56230`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At1g55640`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At5g01640`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At3g56110`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release
`At2g40380`	May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037234 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016192 vesicle-mediated transport Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0010008 endosome membrane Cellular Component

KEGG gene cross-reference

ath:AT1G55640

ath:AT2G40380

ath:AT3G56110

ath:AT5G01640

ath:AT5G56230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.286

Rank 1 · LXL04_037234 · OH-1004

Lysosome / Vacuole0.268

Rank 2 · LXL04_037234 · OH-1004

Golgi apparatus0.251

Rank 3 · LXL04_037234 · OH-1004

Cytoplasm0.210

Rank 4 · LXL04_037234 · OH-1004

Cell membrane0.126

Rank 5 · LXL04_037234 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03208.25PRA133-172 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037234	`PF03208.25`	PRA1	33	172	8.3e-34	116.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FH16`	Arabidopsis thaliana	PRA1 family protein G2	43.716%	Swiss-Prot	moderate database homology
`Q9ZWD1`	Arabidopsis thaliana	PRA1 family protein G1	35.583%	Swiss-Prot	moderate database homology
`Q9M012`	Arabidopsis thaliana	PRA1 family protein B5	35.294%	Swiss-Prot	moderate database homology
`Q9LYN0`	Arabidopsis thaliana	PRA1 family protein B1	34.171%	Swiss-Prot	moderate database homology
`Q9SIY7`	Arabidopsis thaliana	PRA1 family protein B2	36.667%	Swiss-Prot	moderate database homology

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