LXL04_036658 | RubberDandelionOmics

Gene overview

LXL04_036658

Reference: OH-1004 Chr: Chr08 Coordinates: 46333860-46335307 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

909 bp · LXL04_036658|LXL04_036658|OH1004|cDNA

ATGGCCAATGAGATCACATCCAACAGTTATGAAGAGGCTCGAAAGCAACAGCTACTTGAGAACAAAAAAAGATTTGAGGAACTAGGAATCTTGAGTATTACTAAAAGCCTAACTGATCTTTCAAAATCTGAAAAGAAGTCAAAgCCACATGAAGTGAAACTAAAAATAAGAAATACTCCAATCACAGAACCAAGGCGTTCAACACGTGAACGAAACCCCATTGTTTCATATCATGATGAAGTGGATATAGGTCTTCCAAA...

CDS

Download CDS FASTA

900 bp · LXL04_036658|LXL04_036658|OH1004|CDS

ATGGCCAATGAGATCACATCCAACAGTTATGAAGAGGCTCGAAAGCAACAGCTACTTGAGAACAAAAAAAGATTTGAGGAACTAGGAATCTTGAGTATTACTAAAAGCCTAACTGATCTTTCAAAATCTGAAAAGAAGTCAAAGCCACATGAAGTGAAACTAAAAATAAGAAATACTCCAATCACAGAACCAAGGCGTTCAACACGTGAACGAAACCCCATTGTTTCATATCATGATGAAGTGGATATAGGTCTTCCAAA...

Protein

Download Protein FASTA

299 aa · LXL04_036658|LXL04_036658|OH1004|PROTEIN

MANEITSNSYEEARKQQLLENKKRFEELGILSITKSLTDLSKSEKKSKPHEVKLKIRNTPITEPRRSTRERNPIVSYHDEVDIGLPNVRRRSKSNSSWTSYLARPLEEVKIAKYEERVEAMKSAEKLQTNLQSEFPSFVKSMVRSHVYSCFWLGLPMSFCKKHLPKSTVNMVLEDEDGNEYECVFISERTGISGGWRAFALEHKLDDGDALVFELIEPKRFKIHVVKASGDGILDDDDDDDDDDDDDGVIKKGSRGRPKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036658`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036658

Location Chr08:46333860-46335307 (-)

Description Similar to At5g58280: Putative B3 domain-containing protein At5g58280

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58280`	Putative B3 domain-containing protein At5g58280.	No verified direct reference in this release
`At3g19184`	B3 domain-containing protein At3g19184.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0481400`	B3 domain-containing protein Os05g0481400.	No verified direct reference in this release
`Os03g0184500`	B3 domain-containing protein Os03g0184500.	No verified direct reference in this release
`Os06g0194400`	B3 domain-containing protein Os06g0194400.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036658 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G19184

ath:AT5G58280

dosa:Os03g0184500

dosa:Os05g0481400

dosa:Os06g0194400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_036658 · OH-1004

Cytoplasm0.074

Rank 2 · LXL04_036658 · OH-1004

Cell membrane0.017

Rank 3 · LXL04_036658 · OH-1004

Endoplasmic reticulum0.011

Rank 4 · LXL04_036658 · OH-1004

Plastid0.007

Rank 5 · LXL04_036658 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362.27B3138-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036658	`PF02362.27`	B3	138	225	1.2e-18	67.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHB2`	Arabidopsis thaliana	Putative B3 domain-containing protein At5g58280	51.316%	Swiss-Prot	strong database homology
`Q1G3M3`	Arabidopsis thaliana	B3 domain-containing protein At3g19184	40.909%	Swiss-Prot	moderate database homology
`Q5KQI4`	Oryza sativa subsp. japonica	B3 domain-containing protein Os05g0481400	45.417%	Swiss-Prot	moderate database homology
`Q10QS9`	Oryza sativa subsp. japonica	B3 domain-containing protein Os03g0184500	37.607%	Swiss-Prot	moderate database homology
`Q69V36`	Oryza sativa subsp. japonica	B3 domain-containing protein Os06g0194400	35.124%	Swiss-Prot	moderate database homology

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