LXL04_036219 | RubberDandelionOmics

Gene overview

LXL04_036219

Reference: OH-1004 Chr: Chr08 Coordinates: 38071858-38074201 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1230 bp · LXL04_036219|LXL04_036219|OH1004|cDNA

ATGTCAATGTCATCGTCATTAGAAGCAAGCCCATTTCAAATCCCCAAAGAGGTGAAGAAACAAGGAGATATCATCTCCAAAGGACATAAGAACTATGAACTTATGCTCAATTTGCAGCTAGGAATCAGGCATTCCGTTGGAAGACCAGGCCCAACCCCCTCATTAGACTTAAAGCCATCAGCTTTTAATCCAAAGGAGAAAGTATGGACAAGATTTCCACCAGAGGGATCCAAATACACCCCTCCACATCAATCTTGTGA...

CDS

Download CDS FASTA

1230 bp · LXL04_036219|LXL04_036219|OH1004|CDS

ATGTCAATGTCATCGTCATTAGAAGCAAGCCCATTTCAAATCCCCAAAGAGGTGAAGAAACAAGGAGATATCATCTCCAAAGGACATAAGAACTATGAACTTATGCTCAATTTGCAGCTAGGAATCAGGCATTCCGTTGGAAGACCAGGCCCAACCCCCTCATTAGACTTAAAGCCATCAGCTTTTAATCCAAAGGAGAAAGTATGGACAAGATTTCCACCAGAGGGATCCAAATACACCCCTCCACATCAATCTTGTGA...

Protein

Download Protein FASTA

409 aa · LXL04_036219|LXL04_036219|OH1004|PROTEIN

MSMSSSLEASPFQIPKEVKKQGDIISKGHKNYELMLNLQLGIRHSVGRPGPTPSLDLKPSAFNPKEKVWTRFPPEGSKYTPPHQSCEFRWKDYCPLVFRTLRMLFKVDAAEYMLSICGNDSLRELSSPGKSGSFFYLSYDDRYMIKTIKKTEVIVILRMLSAYFNHFRQNENTLLTKFFGLHCVRLTGAAQRKVRFIIMGNLFCTNHTIHRRFDLKGSSLGRLTDKPESEIEATTILKDLDLKFFFRLQKALNEKFRWQI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036219`
TK1151 ID	TkA04G062820
OH-1004 ID	LXL04_036219
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036219

Location Chr08:38071858-38074201 (-)

Description Similar to PIP5K4: Phosphatidylinositol 4-phosphate 5-kinase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56960`	Phosphatidylinositol 4-phosphate 5-kinase 4.	No verified direct reference in this release
`At2g41210`	Phosphatidylinositol 4-phosphate 5-kinase 5.	No verified direct reference in this release
`At3g07960`	Phosphatidylinositol 4-phosphate 5-kinase 6.	No verified direct reference in this release
`At1g21980`	Catalyzes the synthesis of phosphatidylinositol 4,5- bisphosphate and phosphatidylinositol 3,4-bisphosphate.	AtPIP5K1, an Arabidopsis thaliana phosphatidylinositol phosphate kinase, synthesizes PtdIns(3,4)P(2) and PtdIns(4,5)P(2) in vitro and is inhibited by phosphorylation.2001 · DOI: 10.1042/0264-6021:3590583
`At1g77740`	Possesses phosphatidylinositol (PtdIns) phosphate kinase activity (Probable).	Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase.2009 · DOI: 10.1242/jcs.053488

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036219 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003006 developmental process involved in reproduction Biological Process

GO:0006897 endocytosis Biological Process

GO:0007164 establishment of tissue polarity Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010311 lateral root formation Biological Process

GO:0046488 phosphatidylinositol metabolic process Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

KEGG gene cross-reference

ath:AT1G21980

ath:AT1G77740

ath:AT2G41210

ath:AT3G07960

ath:AT3G56960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · LXL04_036219 · OH-1004

Cell membrane0.436

Rank 2 · LXL04_036219 · OH-1004

Nucleus0.205

Rank 3 · LXL04_036219 · OH-1004

Golgi apparatus0.067

Rank 4 · LXL04_036219 · OH-1004

Endoplasmic reticulum0.066

Rank 5 · LXL04_036219 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01504.25PIP5K116-401 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036219	`PF01504.25`	PIP5K	116	401	1e-95	321.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1K2`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 4	69.175%	Swiss-Prot	strong database homology
`Q9SLG9`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 5	67.703%	Swiss-Prot	strong database homology
`Q9SFB8`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 6	68.990%	Swiss-Prot	strong database homology
`Q56YP2`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 1	57.981%	Swiss-Prot	strong database homology
`Q8L796`	Arabidopsis thaliana	Phosphatidylinositol 4-phosphate 5-kinase 2	58.019%	Swiss-Prot	strong database homology

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