LXL04_035685 | RubberDandelionOmics

Gene overview

LXL04_035685

Reference: OH-1004 Chr: Chr08 Coordinates: 27071354-27072986 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

897 bp · LXL04_035685|LXL04_035685|OH1004|cDNA

TTTAATTTCTATTCCCTACTTGCAGACTTACATGTGACATTGTTGGATTGGTTACTATTTAAGTACCTCTTCTTCTCCTCTTTCCGTATCATAATCATTATCTCCTTCTTATTCAGCCTTTTTTGCAGAGCAAAAATGGCGAAATCAGGGTTTCTTTTGCTaacccttttatatattcttaCACCTTATGTCCATGCTTTTACTGCTTCAGGCTGGACAAGAGCTCATGCCACCTTCTATGGAGGAAGTGATGCTTCCGG...

CDS

Download CDS FASTA

858 bp · LXL04_035685|LXL04_035685|OH1004|CDS

TTGTTGGATTGGTTACTATTTAAGTACCTCTTCTTCTCCTCTTTCCGTATCATAATCATTATCTCCTTCTTATTCAGCCTTTTTTGCAGAGCAAAAATGGCGAAATCAGGGTTTCTTTTGCTAACCCTTTTATATATTCTTACACCTTATGTCCATGCTTTTACTGCTTCAGGCTGGACAAGAGCTCATGCCACCTTCTATGGAGGAAGTGATGCTTCCGGAACAATGGGGGGTGCTTGTGGGTATGGTAACTTGTACTC...

Protein

Download Protein FASTA

285 aa · LXL04_035685|LXL04_035685|OH1004|PROTEIN

MLDWLLFKYLFFSSFRIIIIISFLFSLFCRAKMAKSGFLLLTLLYILTPYVHAFTASGWTRAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKLICDYKADPRWCIKGTSITITATNFCPPNFAQPSDDGGWCNPPRQHFDMAQPAWEKIGIYRGGIVPIIYQRVPCKKHGGVRFTINGRDYFELVLISNIGAAGSIQSVQVKGSKTGWMAMSRNWGANWQSNSYLNGQSMSFMVTTTDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035685`
TK1151 ID	TkA04G116030
OH-1004 ID	LXL04_035685
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 95.638 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035685

Location Chr08:27071354-27072986 (+)

Description Similar to EXPA1: Expansin-A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20190`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0228400`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os06g0718100`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os02g0267200`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os03g0155300`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035685 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G20190

dosa:Os02g0267200

dosa:Os03g0155300

dosa:Os04g0228400

dosa:Os06g0718100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.478

Rank 1 · LXL04_035685 · OH-1004

Lysosome / Vacuole0.238

Rank 2 · LXL04_035685 · OH-1004

Cytoplasm0.149

Rank 3 · LXL04_035685 · OH-1004

Endoplasmic reticulum0.110

Rank 4 · LXL04_035685 · OH-1004

Cell membrane0.050

Rank 5 · LXL04_035685 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22514.3EXPB1_D164-189 aa

PF29515.1Expansin_N67-140 aa

PF03330.25DPBB_194-182 aa

PF01357.28Expansin_C193-270 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035685	`PF22514.3`	EXPB1_D1	64	189	5.7e-08	33.9
LXL04_035685	`PF29515.1`	Expansin_N	67	140	1.3e-08	35.8
LXL04_035685	`PF03330.25`	DPBB_1	94	182	4.1e-22	78.9
LXL04_035685	`PF01357.28`	Expansin_C	193	270	2.7e-27	95.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LNU3`	Arabidopsis thaliana	Expansin-A11	74.894%	Swiss-Prot	strong database homology
`Q7XWU8`	Oryza sativa subsp. japonica	Expansin-A1	74.597%	Swiss-Prot	strong database homology
`Q4PR39`	Oryza sativa subsp. japonica	Expansin-A29	70.400%	Swiss-Prot	strong database homology
`Q4PR52`	Oryza sativa subsp. japonica	Expansin-A13	72.961%	Swiss-Prot	strong database homology
`Q7G6Z2`	Oryza sativa subsp. japonica	Expansin-A12	72.973%	Swiss-Prot	strong database homology

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