LXL04_035407 | RubberDandelionOmics

Gene overview

LXL04_035407

Reference: OH-1004 Chr: Chr08 Coordinates: 22066973-22068259 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

429 bp · LXL04_035407|LXL04_035407|OH1004|cDNA

ATGCACTTCTCCGAGCAGTGTGAAATTGGTGGAACAAGAATTATGACAGAGGGAGGAGAAAGGGTTGATTGGCATTCCGCCTGTTCGAGATATTGCAGAGGGTTCCATAGTAACACAAGGGGTGTGGCTGCACGTGCATTACATCTATCAAGAGGAGTTGAGAAACCAAGTGGTAGAGTGACATATATAGTTCTTGAACAGaaacaaAAAACTGGAGGGAGGACTAAAGTTCTTCTGGAAACTGTCATTGTGCATAAACT...

CDS

Download CDS FASTA

429 bp · LXL04_035407|LXL04_035407|OH1004|CDS

ATGCACTTCTCCGAGCAGTGTGAAATTGGTGGAACAAGAATTATGACAGAGGGAGGAGAAAGGGTTGATTGGCATTCCGCCTGTTCGAGATATTGCAGAGGGTTCCATAGTAACACAAGGGGTGTGGCTGCACGTGCATTACATCTATCAAGAGGAGTTGAGAAACCAAGTGGTAGAGTGACATATATAGTTCTTGAACAGAAACAAAAAACTGGAGGGAGGACTAAAGTTCTTCTGGAAACTGTCATTGTGCATAAACT...

Protein

Download Protein FASTA

142 aa · LXL04_035407|LXL04_035407|OH1004|PROTEIN

MHFSEQCEIGGTRIMTEGGERVDWHSACSRYCRGFHSNTRGVAARALHLSRGVEKPSGRVTYIVLEQKQKTGGRTKVLLETVIVHKLADIFVASFEISFEEQLAMLDSVDVKVRLSKATELVDRHLQSIRVAENIFYVSRYI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035407`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035407

Location Chr08:22066973-22068259 (+)

Description Similar to Lon protease homolog 2, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47040`	ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix (By similarity).	Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import.2009 · DOI: 10.1104/pp.109.142505

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BDV1`	ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix.	No verified direct reference in this release
`Os09g0533400`	ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035407 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process

GO:0006625 protein targeting to peroxisome Biological Process

GO:0016485 protein processing Biological Process

GO:0016558 protein import into peroxisome matrix Biological Process

GO:0016560 protein import into peroxisome matrix, docking Biological Process

GO:0048527 lateral root development Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005782 peroxisomal matrix Cellular Component

GO:0070013 intracellular organelle lumen Cellular Component

GO:0004176 ATP-dependent peptidase activity Molecular Function

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT5G47040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.409

Rank 1 · LXL04_035407 · OH-1004

Nucleus0.356

Rank 2 · LXL04_035407 · OH-1004

Mitochondrion0.193

Rank 3 · LXL04_035407 · OH-1004

Cell membrane0.069

Rank 4 · LXL04_035407 · OH-1004

Golgi apparatus0.044

Rank 5 · LXL04_035407 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64948`	Arabidopsis thaliana	Lon protease homolog 2, peroxisomal	91.667%	Swiss-Prot	moderate database homology
`B8BDV1`	Oryza sativa subsp. indica	Lon protease homolog 2, peroxisomal	88.889%	Swiss-Prot	moderate database homology
`Q0J032`	Oryza sativa subsp. japonica	Lon protease homolog 2, peroxisomal	87.500%	Swiss-Prot	moderate database homology

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