LXL04_035306 | RubberDandelionOmics

Gene overview

LXL04_035306

Reference: OH-1004 Chr: Chr08 Coordinates: 19888187-19891085 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

885 bp · LXL04_035306|LXL04_035306|OH1004|cDNA

ATGTTCTTCCTCCAAGCAGCACCACCATCAACCACCGCATTACTGCTGCTCCTCAATCCAAGAAACTTGCCTGCATTCTCCCAATTTTCAGTGAGGCTGTTTAAGGCACAGTCTGAGTATGCTGACAGAGTTGCAGTTGCAGTGGAAGGGGAAAATCATTGTACGGGTCAGATGCGGTTACTGATTGATGAGATAAGTATGCAAAGGGAAAGAGTGGTGGTTTTGGAAGAGAAATTGAGACGCCAAGAAGAGGAGTGTGA...

CDS

Download CDS FASTA

885 bp · LXL04_035306|LXL04_035306|OH1004|CDS

ATGTTCTTCCTCCAAGCAGCACCACCATCAACCACCGCATTACTGCTGCTCCTCAATCCAAGAAACTTGCCTGCATTCTCCCAATTTTCAGTGAGGCTGTTTAAGGCACAGTCTGAGTATGCTGACAGAGTTGCAGTTGCAGTGGAAGGGGAAAATCATTGTACGGGTCAGATGCGGTTACTGATTGATGAGATAAGTATGCAAAGGGAAAGAGTGGTGGTTTTGGAAGAGAAATTGAGACGCCAAGAAGAGGAGTGTGA...

Protein

Download Protein FASTA

294 aa · LXL04_035306|LXL04_035306|OH1004|PROTEIN

MFFLQAAPPSTTALLLLLNPRNLPAFSQFSVRLFKAQSEYADRVAVAVEGENHCTGQMRLLIDEISMQRERVVVLEEKLRRQEEECEQLRTHVQNLERKGVKNLFQQLHAAVVIMACNRADYLERTIDSILKYHGSVTSKFPVFVSQNKGYELQSVDLTYMQHLDYEPVVTERPGELIAYYKIARLINPSLIINFIFDEGTFVHLASKQAMDWNHEFHSLEIPSESLIPTDFKMVVLQKGSWPPQDRTMVVACLAEVAQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035306`
TK1151 ID	TkA02G528980
OH-1004 ID	LXL04_035306
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	81.100
Protein coverage (%)	TK1151 31.624 / OH-1004 12.585 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035306

Location Chr08:19888187-19891085 (+)

Description Similar to GNTI: Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38240`	Initiates complex N-linked carbohydrate formation.	Salt tolerance of Arabidopsis thaliana requires maturation of N-glycosylated proteins in the Golgi apparatus.2008 · DOI: 10.1073/pnas.0800237105 Comparative analyses of Arabidopsis complex glycan1 mutants and genetic interaction with staurosporin and temperature sensitive3a.2008 · DOI: 10.1104/pp.108.127027

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035306 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0006491 N-glycan processing Biological Process

GO:0006972 hyperosmotic response Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Molecular Function

GO:0016262 protein N-acetylglucosaminyltransferase activity Molecular Function

GO:0016757 glycosyltransferase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G38240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.300

Rank 1 · LXL04_035306 · OH-1004

Nucleus0.295

Rank 2 · LXL04_035306 · OH-1004

Endoplasmic reticulum0.249

Rank 3 · LXL04_035306 · OH-1004

Mitochondrion0.141

Rank 4 · LXL04_035306 · OH-1004

Golgi apparatus0.114

Rank 5 · LXL04_035306 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03071.22GNT-I30-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035306	`PF03071.22`	GNT-I	30	204	1.2e-34	120.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XGM8`	Arabidopsis thaliana	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	55.621%	Swiss-Prot	moderate database homology

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