LXL04_035016 | RubberDandelionOmics

Gene overview

LXL04_035016

Reference: OH-1004 Chr: Chr08 Coordinates: 11328172-11331912 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2112 bp · LXL04_035016|LXL04_035016|OH1004|cDNA

ATGTGTGTAGTTTGGGTGCGCATGGAGATAACATACGCATCCTCTAGTGTTTCTGACCTCGTCGGATCGGTCTCTTCCATGGCCAGGACTTCGACTCCGGCACCGCCTCGTGCTGTTAAAGTCATACCGTTCCAGCACCCATACGCCGCTGCCGATACAACGCCTACGTCGTCGTCTACGACGCCATTTTCGAGATGGAGAACGAAGGTTAAACGGATGAAGACGGTTGATTGGATTGATTTCTTCCTCCCTTGCTCCAG...

CDS

Download CDS FASTA

2112 bp · LXL04_035016|LXL04_035016|OH1004|CDS

ATGTGTGTAGTTTGGGTGCGCATGGAGATAACATACGCATCCTCTAGTGTTTCTGACCTCGTCGGATCGGTCTCTTCCATGGCCAGGACTTCGACTCCGGCACCGCCTCGTGCTGTTAAAGTCATACCGTTCCAGCACCCATACGCCGCTGCCGATACAACGCCTACGTCGTCGTCTACGACGCCATTTTCGAGATGGAGAACGAAGGTTAAACGGATGAAGACGGTTGATTGGATTGATTTCTTCCTCCCTTGCTCCAG...

Protein

Download Protein FASTA

703 aa · LXL04_035016|LXL04_035016|OH1004|PROTEIN

MCVVWVRMEITYASSSVSDLVGSVSSMARTSTPAPPRAVKVIPFQHPYAAADTTPTSSSTTPFSRWRTKVKRMKTVDWIDFFLPCSRWIRTYNWRGNLQPDVIAGVTVGIMLVPQSMSYAKLAGLQPIYGLYTGLVPVFVYAIFGSSRQLAVGPVALVSLLVSNVLGNFDSSAELYTELAILLSLMVGILECTMGLLRLGWLIRFISRAVISGFTTASAFVIGLSQAKDFLGYNVDRSSKIIPLVKSIIAGADKFSWPPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035016`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035016

Location Chr08:11328172-11331912 (+)

Description Similar to SULTR4;1: Sulfate transporter 4.1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13550`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At3g12520`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release
`At3g51895`	H(+)/sulfate cotransporter that may play a role in the regulation of sulfate assimilation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035016 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0055085 transmembrane transport Biological Process

GO:1902358 sulfate transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0008271 secondary active sulfate transmembrane transporter activity Molecular Function

GO:0015116 sulfate transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G12520

ath:AT3G51895

ath:AT5G13550

cre:CHLRE_17g723350v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.371

Rank 1 · LXL04_035016 · OH-1004

Lysosome / Vacuole0.330

Rank 2 · LXL04_035016 · OH-1004

Cytoplasm0.124

Rank 3 · LXL04_035016 · OH-1004

Endoplasmic reticulum0.122

Rank 4 · LXL04_035016 · OH-1004

Golgi apparatus0.096

Rank 5 · LXL04_035016 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00916.27Sulfate_transp98-470 aa

PF01740.27STAS521-640 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035016	`PF00916.27`	Sulfate_transp	98	470	2.3e-128	428.9
LXL04_035016	`PF01740.27`	STAS	521	640	5.2e-24	84.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FY46`	Arabidopsis thaliana	Sulfate transporter 4.1, chloroplastic	72.462%	Swiss-Prot	strong database homology
`Q8GYH8`	Arabidopsis thaliana	Probable sulfate transporter 4.2	69.715%	Swiss-Prot	strong database homology
`Q9SV13`	Arabidopsis thaliana	Sulfate transporter 3.1	37.605%	Swiss-Prot	moderate database homology

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