LXL04_034687 | RubberDandelionOmics

Gene overview

LXL04_034687

Reference: OH-1004 Chr: Chr07 Coordinates: 113702194-113704491 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1236 bp · LXL04_034687|LXL04_034687|OH1004|cDNA

ATGAATCTGGTGAAAGTTAGGGAAGCGACAGAAAACTCGTGGAAGAAGATGATACCATCGGACCCCAAGCCGACCACCAACCGCAACCCAGCTACCAGTAGCAGCAGCGCTCAACTGAATCGTTGGTCTAGAGCTCGAGTGATCAGATCCGGCCGACAGCTTGACCGCGGTGCGCACGGCAAACAAGAGCAGACCACGGAGGTCGTTAATCAGCAGCTGCGTCGGTTAGAAGGGAGCGATCTCTCTGTTACTAGTTCGTA...

CDS

Download CDS FASTA

1236 bp · LXL04_034687|LXL04_034687|OH1004|CDS

ATGAATCTGGTGAAAGTTAGGGAAGCGACAGAAAACTCGTGGAAGAAGATGATACCATCGGACCCCAAGCCGACCACCAACCGCAACCCAGCTACCAGTAGCAGCAGCGCTCAACTGAATCGTTGGTCTAGAGCTCGAGTGATCAGATCCGGCCGACAGCTTGACCGCGGTGCGCACGGCAAACAAGAGCAGACCACGGAGGTCGTTAATCAGCAGCTGCGTCGGTTAGAAGGGAGCGATCTCTCTGTTACTAGTTCGTA...

Protein

Download Protein FASTA

411 aa · LXL04_034687|LXL04_034687|OH1004|PROTEIN

MNLVKVREATENSWKKMIPSDPKPTTNRNPATSSSSAQLNRWSRARVIRSGRQLDRGAHGKQEQTTEVVNQQLRRLEGSDLSVTSSYCSPSSSEDGIPGGMEKAPVKGKEIYMVSDGSGRTAEHSVNAALGQFEHFIVDHGCPVHTRLFSGINDVERLTEIVIQAAKEHAILIYTLADEKMANSAHHACKSWGVQSTDVLRPITKAIAVHLGVSPSGLPRGAPGRKFPLTENYFNRIDAIEFTIKLDDGALPENLPKADI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034687`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034687

Location Chr07:113702194-113704491 (-)

Description Similar to PDRP1: Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21210`	Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation.	No verified direct reference in this release
`At3g01200`	Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0530600`	Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation.	No verified direct reference in this release
`UniProt: A2YM35`	Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034687 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016776 phosphotransferase activity, phosphate group as acceptor Molecular Function

KEGG gene cross-reference

ath:AT3G01200

ath:AT4G21210

dosa:Os07g0530600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.712

Rank 1 · LXL04_034687 · OH-1004

Cytoplasm0.135

Rank 2 · LXL04_034687 · OH-1004

Nucleus0.112

Rank 3 · LXL04_034687 · OH-1004

Mitochondrion0.105

Rank 4 · LXL04_034687 · OH-1004

Cell membrane0.055

Rank 5 · LXL04_034687 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03618.21Kinase-PPPase111-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034687	`PF03618.21`	Kinase-PPPase	111	380	3.5e-83	279.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49562`	Arabidopsis thaliana	Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic	56.614%	Swiss-Prot	strong database homology
`Q9MAC9`	Arabidopsis thaliana	Pyruvate, phosphate dikinase regulatory protein 2	53.003%	Swiss-Prot	strong database homology
`Q8GVP6`	Oryza sativa subsp. japonica	Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic	59.894%	Swiss-Prot	strong database homology
`A2YM35`	Oryza sativa subsp. indica	Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic	59.894%	Swiss-Prot	strong database homology

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