Gene Card
Gene overview
cDNA / CDS / Protein Sequences
825 bp · LXL04_034146|LXL04_034146|OH1004|cDNA
ATGTGCTTCCTTCTCTGTCGCAGAGTAGGGATTTGGGTTCCCATGGAGGAACGAACAAAGGAGAAGAAGATGAGTAGTAGTTCAGGGAGACAAGTGAAGGCTATGCTTCGGAAGAACTGGCTTCTCAAAATTCGTCATCCTTATATCACACTTGCGGAGATGATGTGGAGGCTTATGTTTCGCTTTGTGGCTTTTCAGAAAAAAGTTGGGACAGCAAAAAGAAGACAAAGTAAAGACAGcaaaaagaaaacaaaAAAAGA...
825 bp · LXL04_034146|LXL04_034146|OH1004|CDS
ATGTGCTTCCTTCTCTGTCGCAGAGTAGGGATTTGGGTTCCCATGGAGGAACGAACAAAGGAGAAGAAGATGAGTAGTAGTTCAGGGAGACAAGTGAAGGCTATGCTTCGGAAGAACTGGCTTCTCAAAATTCGTCATCCTTATATCACACTTGCGGAGATGATGTGGAGGCTTATGTTTCGCTTTGTGGCTTTTCAGAAAAAAGTTGGGACAGCAAAAAGAAGACAAAGTAAAGACAGCAAAAAGAAAACAAAAAAAGA...
Protein
Download Protein FASTA274 aa · LXL04_034146|LXL04_034146|OH1004|PROTEIN
MCFLLCRRVGIWVPMEERTKEKKMSSSSGRQVKAMLRKNWLLKIRHPYITLAEMMWRLMFRFVAFQKKVGTAKRRQSKDSKKKTKKDQNAPIRAEDMYFIGERVIDISAIGVPVRNAVPVKKGLFDHFSEIFQQETKNDWCQDASEIKKTHEIKNAIWTCGGNKSPGPDRFTIEFFKKFWDIIKLDLLKCFINLIPKSFNPSEFNHFRPISLNGLTYKVVSKVLGNRLKSVLPSIISDVQSAFVKNRKILDGPLVLNEII...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034146 |
|---|---|
| TK1151 ID | TkA03G178360 |
| OH-1004 ID | LXL04_034146 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 74.100 |
| Protein coverage (%) | TK1151 37.762 / OH-1004 19.708Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034146 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr07:85162073-85168465 (-) | ||||||
| Description | Similar to Transposon TX1 uncharacterized 149 kDa protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006869 lipid transport Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005739 mitochondrion Cellular Component GO:0016020 membrane Cellular Component GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0005319 lipid transporter activity Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT2G41700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q84M24 | Arabidopsis thaliana | ABC transporter A family member 1 | 44.262% | Swiss-Prot | weak database homology |