LXL04_032596 | RubberDandelionOmics

Gene overview

LXL04_032596

Reference: OH-1004 Chr: Chr07 Coordinates: 26060107-26062688 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1749 bp · LXL04_032596|LXL04_032596|OH1004|cDNA

ATGTTTCTATCTCTCCAATTCAACAATTTTTCAGGGGTTCTTCCTGATTCATGGGGTGGTGGAAAAAACGGCGATAAATCGATAGTCAAATCAATCCGATACATTTTCCGAGTCAAAAGGATTGAGAGAAAGGATTACAAAGAGTCAAAAGGAGTCATTATCCCCAAGATAAACCCACGGTTTCACAGCATTCGGGTATATAAACCATTTCTCAGATCGGCTTCACTCGCCAAGAACAATTACAGTCAGCTGAACTCCAC...

CDS

Download CDS FASTA

1749 bp · LXL04_032596|LXL04_032596|OH1004|CDS

ATGTTTCTATCTCTCCAATTCAACAATTTTTCAGGGGTTCTTCCTGATTCATGGGGTGGTGGAAAAAACGGCGATAAATCGATAGTCAAATCAATCCGATACATTTTCCGAGTCAAAAGGATTGAGAGAAAGGATTACAAAGAGTCAAAAGGAGTCATTATCCCCAAGATAAACCCACGGTTTCACAGCATTCGGGTATATAAACCATTTCTCAGATCGGCTTCACTCGCCAAGAACAATTACAGTCAGCTGAACTCCAC...

Protein

Download Protein FASTA

582 aa · LXL04_032596|LXL04_032596|OH1004|PROTEIN

MFLSLQFNNFSGVLPDSWGGGKNGDKSIVKSIRYIFRVKRIERKDYKESKGVIIPKINPRFHSIRVYKPFLRSASLAKNNYSQLNSTMSNNESTAAAAAADSPITKPSVVGRWADEPDDVPEEPDAPSTSSATDEVKLESLAIDESKKVNNFLDDPDDSNIEAVTGETPYTSAVRFEDLNLSPELLKGLYVEMKFERPSKIQSISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRVDPKLGVPQALCICPTRELAIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032596`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032596

Location Chr07:26060107-26062688 (+)

Description Similar to RH38: DEAD-box ATP-dependent RNA helicase 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53110`	ATP-dependent RNA helicase essential for mRNA export from the nucleus.	A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis.2005 · DOI: 10.1105/tpc.104.027557

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0158200`	ATP-dependent RNA helicase essential for mRNA export from the nucleus.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032596 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006406 mRNA export from nucleus Biological Process

GO:0006409 tRNA export from nucleus Biological Process

GO:0006415 translational termination Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010467 gene expression Biological Process

GO:0015031 protein transport Biological Process

GO:0016973 poly(A)+ mRNA export from nucleus Biological Process

GO:0051028 mRNA transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

KEGG gene cross-reference

ath:AT3G53110

cal:CAALFM_C301860CA

dosa:Os03g0158200

sce:YOR046C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.457

Rank 1 · LXL04_032596 · OH-1004

Nucleus0.358

Rank 2 · LXL04_032596 · OH-1004

Mitochondrion0.110

Rank 3 · LXL04_032596 · OH-1004

Endoplasmic reticulum0.086

Rank 4 · LXL04_032596 · OH-1004

Cell membrane0.080

Rank 5 · LXL04_032596 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270.36DEAD200-372 aa

PF04851.22ResIII215-367 aa

PF00271.38Helicase_C420-531 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032596	`PF00270.36`	DEAD	200	372	2.7e-35	122.3
LXL04_032596	`PF04851.22`	ResIII	215	367	3.8e-08	34.1
LXL04_032596	`PF00271.38`	Helicase_C	420	531	9.7e-27	94.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZG7`	Arabidopsis thaliana	DEAD-box ATP-dependent RNA helicase 38	67.556%	Swiss-Prot	strong database homology
`Q10RI7`	Oryza sativa subsp. japonica	DEAD-box ATP-dependent RNA helicase 38	64.665%	Swiss-Prot	strong database homology

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