LXL04_032138 | RubberDandelionOmics

Gene overview

LXL04_032138

Reference: OH-1004 Chr: Chr07 Coordinates: 17346711-17347370 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

660 bp · LXL04_032138|LXL04_032138|OH1004|cDNA

ATGGCTGCTTTCCCTCAAACCCGAGAACCTGATACACCTTCCTTCTCTTCTACGTCAGCTTCTTTGCACACGGTGGTGGAGGCGGCGCCGCTACCGGAATCCAAAGTGAAGAAGAGAAGTCGGAAAGATGTTAGCTACAAGCACCCTGTTTACAGAGGAGTTCGAATGCGGAGTTGGGGGAAATGGGTGTCGGAAATCCGACAACCGCGGAAGAAATCTCGCATTTGGCTCGGAACTTTTTCCACGGCGGAGATGGCGGC...

CDS

Download CDS FASTA

660 bp · LXL04_032138|LXL04_032138|OH1004|CDS

ATGGCTGCTTTCCCTCAAACCCGAGAACCTGATACACCTTCCTTCTCTTCTACGTCAGCTTCTTTGCACACGGTGGTGGAGGCGGCGCCGCTACCGGAATCCAAAGTGAAGAAGAGAAGTCGGAAAGATGTTAGCTACAAGCACCCTGTTTACAGAGGAGTTCGAATGCGGAGTTGGGGGAAATGGGTGTCGGAAATCCGACAACCGCGGAAGAAATCTCGCATTTGGCTCGGAACTTTTTCCACGGCGGAGATGGCGGC...

Protein

Download Protein FASTA

219 aa · LXL04_032138|LXL04_032138|OH1004|PROTEIN

MAAFPQTREPDTPSFSSTSASLHTVVEAAPLPESKVKKRSRKDVSYKHPVYRGVRMRSWGKWVSEIRQPRKKSRIWLGTFSTAEMAARAHDVAALSIKGNSAVLNFPELKESLPRPVSLSPRDVQEAAAKGATMLEFSTSETLPPPVDGINPADELGEIIELPSLEGCLDSPESSTGLAMVDLVDRWMYPSWAVADIDGFLDFISDHLAENGSNKLIWD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032138`
TK1151 ID	TkA08G152140
OH-1004 ID	LXL04_032138
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032138

Location Chr07:17346711-17347370 (+)

Description Similar to DREB3: Dehydration-responsive element-binding protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11590`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g25810`	Putative transcriptional activator.	No verified direct reference in this release
`At4g32800`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At3g16280`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At2g44940`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032138 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G44940

ath:AT3G16280

ath:AT4G32800

ath:AT5G11590

ath:AT5G25810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924

Rank 1 · LXL04_032138 · OH-1004

Cytoplasm0.130

Rank 2 · LXL04_032138 · OH-1004

Cell membrane0.039

Rank 3 · LXL04_032138 · OH-1004

Endoplasmic reticulum0.031

Rank 4 · LXL04_032138 · OH-1004

Plastid0.025

Rank 5 · LXL04_032138 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP249-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032138	`PF00847.27`	AP2	49	99	4e-15	56.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYD3`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 3	48.165%	Swiss-Prot	moderate database homology
`Q39127`	Arabidopsis thaliana	Ethylene-responsive transcription factor TINY	53.672%	Swiss-Prot	strong database homology
`Q9M080`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF043	75.758%	Swiss-Prot	weak database homology
`Q9LU18`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF036	55.696%	Swiss-Prot	moderate database homology
`Q8LBQ7`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF034	71.579%	Swiss-Prot	weak database homology

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