LXL04_032080 | RubberDandelionOmics

Gene overview

LXL04_032080

Reference: OH-1004 Chr: Chr07 Coordinates: 16465445-16466139 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

612 bp · LXL04_032080|LXL04_032080|OH1004|cDNA

ATGGCTATGTCCCGTTTGATCACACACAGTCACCGATCACCACTAATAACCCGCCAATGGACCTCTCAACTCCTCCACCGTCTCACCATCACGACAACCACCGACCACCATGAAAAACCAGACACGAAAGAGATTTCCATCTCCGAATCTACCAGAAAACCCAAACTCTTTTCCCCACGGAGGTCACCTTGGTCGCAAAATAATGATCGGAACTTCCCCGGAGTCGGGCATGCGATCGTGGAAGCGGCGGCGAACATGAA...

CDS

Download CDS FASTA

612 bp · LXL04_032080|LXL04_032080|OH1004|CDS

ATGGCTATGTCCCGTTTGATCACACACAGTCACCGATCACCACTAATAACCCGCCAATGGACCTCTCAACTCCTCCACCGTCTCACCATCACGACAACCACCGACCACCATGAAAAACCAGACACGAAAGAGATTTCCATCTCCGAATCTACCAGAAAACCCAAACTCTTTTCCCCACGGAGGTCACCTTGGTCGCAAAATAATGATCGGAACTTCCCCGGAGTCGGGCATGCGATCGTGGAAGCGGCGGCGAACATGAA...

Protein

Download Protein FASTA

203 aa · LXL04_032080|LXL04_032080|OH1004|PROTEIN

MAMSRLITHSHRSPLITRQWTSQLLHRLTITTTTDHHEKPDTKEISISESTRKPKLFSPRRSPWSQNNDRNFPGVGHAIVEAAANMNRLLKNFAPAHLIRRFKEKDESYSLKYQMPGLSKDDVKITVEDGMLFIRGERKEEEEDGDEEEYWAAARYGYYNTSLMLPEDAKVEEIRAEMKDGVLHVIIPKDDTKKKHVKEVKVG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032080`
TK1151 ID	TkA08G148640
OH-1004 ID	LXL04_032080
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032080

Location Chr07:16465445-16466139 (-)

Description Similar to HSP26.5: 26.5 kDa heat shock protein, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g52560`	26.5 kDa heat shock protein, mitochondrial.	No verified direct reference in this release
`At4g27670`	Chaperone protein required for seedling and chloroplast development under heat stress, probably by maintaining plastid-encoded RNA polymerase (PEP)-dependent transcription.	Chloroplast small heat shock protein HSP21 interacts with plastid nucleoid protein pTAC5 and is essential for chloroplast development in Arabidopsis under heat stress.2013 · DOI: 10.1105/tpc.113.111229

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0201000`	23.6 kDa heat shock protein, mitochondrial.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032080 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009408 response to heat Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0042644 chloroplast nucleoid Cellular Component

GO:0101031 protein folding chaperone complex Cellular Component

KEGG gene cross-reference

ath:AT1G52560

ath:AT4G27670

osa:107278626

sly:544024

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.775

Rank 1 · LXL04_032080 · OH-1004

Plastid0.169

Rank 2 · LXL04_032080 · OH-1004

Cytoplasm0.110

Rank 3 · LXL04_032080 · OH-1004

Nucleus0.067

Rank 4 · LXL04_032080 · OH-1004

Cell membrane0.025

Rank 5 · LXL04_032080 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00011.28HSP20103-202 aa

PF27746.1Small_heat_shock_put108-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032080	`PF00011.28`	HSP20	103	202	2.3e-24	86.1
LXL04_032080	`PF27746.1`	Small_heat_shock_put	108	188	5.9e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SSQ8`	Arabidopsis thaliana	26.5 kDa heat shock protein, mitochondrial	41.395%	Swiss-Prot	moderate database homology
`P31170`	Arabidopsis thaliana	Heat shock protein 21, chloroplastic	40.625%	Swiss-Prot	weak database homology
`B7EZJ7`	Oryza sativa subsp. japonica	23.6 kDa heat shock protein, mitochondrial	38.235%	Swiss-Prot	moderate database homology

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