LXL04_031319 | RubberDandelionOmics

Gene overview

LXL04_031319

Reference: OH-1004 Chr: Chr07 Coordinates: 4485266-4486757 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_031319|LXL04_031319|OH1004|cDNA

ATGCGACTAGGGTTTGTAGAGGTTTTCACTTTCGATTTTGGCACAGAAATGAAAAACCGGGAGAGGCAGGAGGAATACGATGCACCTTCCTTTAATATCACCGATTTCGATTCTCCTTCTGAAATGAAAAACCTGGAGCTGCAGGAGGAATACGATGATCCTTCATTTAATATCACCGATTTCGTCTTGCGATTATCTCAAATTCTAGGCACCCGCACTAAGGTCGTCAGTGATGGTAAAATCGTGTCTGTGGAGGCCTT...

CDS

Download CDS FASTA

816 bp · LXL04_031319|LXL04_031319|OH1004|CDS

ATGCGACTAGGGTTTGTAGAGGTTTTCACTTTCGATTTTGGCACAGAAATGAAAAACCGGGAGAGGCAGGAGGAATACGATGCACCTTCCTTTAATATCACCGATTTCGATTCTCCTTCTGAAATGAAAAACCTGGAGCTGCAGGAGGAATACGATGATCCTTCATTTAATATCACCGATTTCGTCTTGCGATTATCTCAAATTCTAGGCACCCGCACTAAGGTCGTCAGTGATGGTAAAATCGTGTCTGTGGAGGCCTT...

Protein

Download Protein FASTA

271 aa · LXL04_031319|LXL04_031319|OH1004|PROTEIN

MRLGFVEVFTFDFGTEMKNRERQEEYDAPSFNITDFDSPSEMKNLELQEEYDDPSFNITDFVLRLSQILGTRTKVVSDGKIVSVEALVQADDIENSASHGEAGSTRSRSSFPEKITSSEDELPAADQRESSASIGGPVTSHMDNLTSEHVSVKRQKVKIQGRRRLCKVAVKDEEEEKEDAIFQDVESDFTAAVSDFDSRVPEKYKSAILHGNDKNASDRDKRIGSAVAQDLRNCIQPYFLRRLKNEVFRGDGGTNTAKLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031319`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031319

Location Chr07:4485266-4486757 (+)

Description Similar to CHR24: Protein CHROMATIN REMODELING 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63950`	DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity).	A transient assay for recombination demonstrates that Arabidopsis SNM1 and XRCC3 enhance non-homologous recombination.2011 · DOI: 10.4238/vol10-3gmr1347

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0692750`	DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity).	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development.2015 · DOI: 10.1111/tpj.12705

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031319 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0010965 regulation of mitotic sister chromatid separation Biological Process

GO:0045951 positive regulation of mitotic recombination Biological Process

GO:0051301 cell division Biological Process

GO:2000014 regulation of endosperm development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004386 helicase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G63950

dosa:Os04g0692750

osa:9266414

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.684

Rank 1 · LXL04_031319 · OH-1004

Cytoplasm0.312

Rank 2 · LXL04_031319 · OH-1004

Cell membrane0.054

Rank 3 · LXL04_031319 · OH-1004

Mitochondrion0.050

Rank 4 · LXL04_031319 · OH-1004

Endoplasmic reticulum0.031

Rank 5 · LXL04_031319 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W103`	Arabidopsis thaliana	Protein CHROMATIN REMODELING 24	61.429%	Swiss-Prot	weak database homology
`A0A0P0WGX7`	Oryza sativa subsp. japonica	SNF2 domain-containing protein ENL1	57.971%	Swiss-Prot	weak database homology

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