LXL04_031100 | RubberDandelionOmics

Gene overview

LXL04_031100

Reference: OH-1004 Chr: Chr07 Coordinates: 532415-546620 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2667 bp · LXL04_031100|LXL04_031100|OH1004|cDNA

ATGGCTTGTAAGCTATTAGGGTTTTGtagcggtggtggtggtgctGTAGCAGTTGCAAGGAGGGTGGATGATAGTGTACACACCACCGCTAGTGACGGTCCTGTGAGACTTGGCGTTCATAGCACATTAGAAAAAGTGTTTACAAAGGGTCTAATGGCGATGATGGGGGTAAAGTTGCATTTCCGAAAGCACCATgTGGTTATGGAGAACGGCATTGTTCAACTCACACTAACGAATCCTGGTGGATATGTTACCGGGGT...

CDS

Download CDS FASTA

2667 bp · LXL04_031100|LXL04_031100|OH1004|CDS

ATGGCTTGTAAGCTATTAGGGTTTTGTAGCGGTGGTGGTGGTGCTGTAGCAGTTGCAAGGAGGGTGGATGATAGTGTACACACCACCGCTAGTGACGGTCCTGTGAGACTTGGCGTTCATAGCACATTAGAAAAAGTGTTTACAAAGGGTCTAATGGCGATGATGGGGGTAAAGTTGCATTTCCGAAAGCACCATGTGGTTATGGAGAACGGCATTGTTCAACTCACACTAACGAATCCTGGTGGATATGTTACCGGGGT...

Protein

Download Protein FASTA

888 aa · LXL04_031100|LXL04_031100|OH1004|PROTEIN

MACKLLGFCSGGGGAVAVARRVDDSVHTTASDGPVRLGVHSTLEKVFTKGLMAMMGVKLHFRKHHVVMENGIVQLTLTNPGGYVTGVKYNNIDNLLEVHNDESDRGYWDLVWSPPRSLVTTGTFERIEGTSCEVVVETGDQVELSFSRTWDPSLKGKHVPLKIDKRFVLLRGCSGFYSYGIYQHLEGWPAFNLPETRIVFKLRKDKFHYMAMSDDRHRYMPLPDDRSSDRGKPLAYPEAVLLVDPLEPEFKGETTGPPPA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031100`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_031100`
Location	Chr07:532415-546620 (+)
Description	Similar to rhiE: Rhamnogalacturonate lyase (Dickeya dadantii (strain 3937)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031100` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000272 polysaccharide catabolic process Biological Process GO:0005975 carbohydrate metabolic process Biological Process GO:0045490 pectin catabolic process Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0004112 cyclic-nucleotide phosphodiesterase activity Molecular Function GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides Molecular Function GO:0030246 carbohydrate binding Molecular Function GO:0102210 rhamnogalacturonan endolyase activity Molecular Function
KEGG gene cross-reference	ang:An11g00390 ani:ANIA_04139 ani:ANIA_06395 ddd:Dda3937_01465 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.324

Rank 1 · LXL04_031100 · OH-1004

Endoplasmic reticulum0.201

Rank 2 · LXL04_031100 · OH-1004

Extracellular0.191

Rank 3 · LXL04_031100 · OH-1004

Cytoplasm0.179

Rank 4 · LXL04_031100 · OH-1004

Cell membrane0.124

Rank 5 · LXL04_031100 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06045.18Rhamnogal_lyase54-253 aa

PF14686.13fn3_3599-671 aa

PF14683.13CBM-like685-874 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031100	`PF06045.18`	Rhamnogal_lyase	54	253	2.3e-89	299.1
LXL04_031100	`PF14686.13`	fn3_3	599	671	4.3e-23	81.6
LXL04_031100	`PF14683.13`	CBM-like	685	874	6.1e-46	156.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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