Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1724 bp · LXL04_030858|LXL04_030858|OH1004|cDNA
ggtggCTCCTATGTTTCAAGTCAACTTGATCCCATCGACACCCAATCCACAGCAAACTCCACGAGCTCGATCATTTCTTATTTACCTCAAGGTTTATTTTCTCGATGGAGGCAAAGTCGGAGACCATTTTCCGATCACGGCTGCCGGACATTTACATACCCAAGCATCTCTCTTTGCACGCGTATTGCTTTGAGAACATTGACAAGTTCAGTGACCGGCCGTGTTTGATTGACGGTGCCAGTGGTGTCGTGTACAGCTAT...
1620 bp · LXL04_030858|LXL04_030858|OH1004|CDS
ATGGAGGCAAAGTCGGAGACCATTTTCCGATCACGGCTGCCGGACATTTACATACCCAAGCATCTCTCTTTGCACGCGTATTGCTTTGAGAACATTGACAAGTTCAGTGACCGGCCGTGTTTGATTGACGGTGCCAGTGGTGTCGTGTACAGCTATGCTGACGTCGAGCTCACCTCGAGAAAGGTCGGTTCTGCCCTTCACAAACTAGGCATCGACAAGGGTGACGTCATCATGATTTTGCTCCCGAATTCGCCGGAGTT...
Protein
Download Protein FASTA539 aa · LXL04_030858|LXL04_030858|OH1004|PROTEIN
MEAKSETIFRSRLPDIYIPKHLSLHAYCFENIDKFSDRPCLIDGASGVVYSYADVELTSRKVGSALHKLGIDKGDVIMILLPNSPEFVFSFLGASFIGAMSTMANPFFTSAEIIKQAKASGAKIIITQSAHAAKVKDFASENSIKVICIDSATEECLHFSELTSGDEKELPEVDISSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLWIHSEDVLMCVLPLFHIYSLNSILLCGLRAGAGILIMQKFDI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030858 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030858 |
|---|---|
| Location | Chr06:124247902-124250996 (+) |
| Description | Similar to 4CL1: 4-coumarate--CoA ligase 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007623 circadian rhythm Biological Process GO:0009611 response to wounding Biological Process GO:0009698 phenylpropanoid metabolic process Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0009800 cinnamic acid biosynthetic process Biological Process GO:0009803 cinnamic acid metabolic process Biological Process GO:0033494 ferulate metabolic process Biological Process GO:0052315 phytoalexin biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0005524 ATP binding Molecular Function GO:0016207 4-coumarate-CoA ligase activity Molecular Function GO:0016405 CoA-ligase activity Molecular Function |
| KEGG gene cross-reference | nta:107797004 nta:107803673 sot:102596056 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00501.35AMP-binding30-398 aaPF13193.13AMP-binding_C448-523 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030858 | PF00501.35 | AMP-binding | 30 | 398 | 1.2e-96 | 324.6 |
| LXL04_030858 | PF13193.13 | AMP-binding_C | 448 | 523 | 1.1e-17 | 65.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.