Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1056 bp · LXL04_030551|LXL04_030551|OH1004|cDNA
ATGGGGTGTTCTTTTTCGGGATTAAACGCCCTATACGACGCTGTTAACGGAGGCGCCGATGTTTGGATCAACGACAACCGCTTCAAAATCGTCCGTCAGCTCGGCGAGGGTGGTTTTGCCTATGTATTCCTTGTTAGGGAGGCCATCACCGATGCTTCCGCCGGTGGCGTCTCGAAGAAATTCAAAGACCCCTCACACATCTCCGACGATGGAACTTATGCGATGAAGAAAGTTCTGATTCAGAATAGCGATCAGCTGGA...
1056 bp · LXL04_030551|LXL04_030551|OH1004|CDS
ATGGGGTGTTCTTTTTCGGGATTAAACGCCCTATACGACGCTGTTAACGGAGGCGCCGATGTTTGGATCAACGACAACCGCTTCAAAATCGTCCGTCAGCTCGGCGAGGGTGGTTTTGCCTATGTATTCCTTGTTAGGGAGGCCATCACCGATGCTTCCGCCGGTGGCGTCTCGAAGAAATTCAAAGACCCCTCACACATCTCCGACGATGGAACTTATGCGATGAAGAAAGTTCTGATTCAGAATAGCGATCAGCTGGA...
Protein
Download Protein FASTA351 aa · LXL04_030551|LXL04_030551|OH1004|PROTEIN
MGCSFSGLNALYDAVNGGADVWINDNRFKIVRQLGEGGFAYVFLVREAITDASAGGVSKKFKDPSHISDDGTYAMKKVLIQNSDQLELVKEEIRVSALFSHPNLLPLLDHAIIPVKRSCSVLQSTSEQPWTHEAYLLFPVHLDGTLLDNATTMKSKKLFYSTSDVLHIFRQLCAGLKHLHTLTPPFAHNDVKPGNVLLTHRKGQPPLAILMDFGSARPARRQIRSRSEALQLQEWASEHVSAPFRAPELWDCPSQTDIDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030551 |
|---|---|
| TK1151 ID | TkA07G410810 |
| OH-1004 ID | LXL04_030551 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030551 |
|---|---|
| Location | Chr06:118435091-118436585 (-) |
| Description | Similar to Stk16: Serine/threonine-protein kinase 16 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006468 protein phosphorylation Biological Process GO:0006624 vacuolar protein processing Biological Process GO:0023052 signaling Biological Process GO:0032889 regulation of vacuole fusion, non-autophagic Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0046777 protein autophosphorylation Biological Process GO:0071560 cellular response to transforming growth factor beta stimulus Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005773 vacuole Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005794 Golgi apparatus Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0280111 hsa:8576 mmu:20872 rno:286927 spo:2543440 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07714.24PK_Tyr_Ser-Thr31-283 aaPF00069.32Pkinase66-341 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030551 | PF07714.24 | PK_Tyr_Ser-Thr | 31 | 283 | 7.2e-12 | 45.9 |
| LXL04_030551 | PF00069.32 | Pkinase | 66 | 341 | 6.9e-29 | 101.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.