LXL04_030328 | RubberDandelionOmics

Gene overview

LXL04_030328

Reference: OH-1004 Chr: Chr06 Coordinates: 114360573-114365842 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4389 bp · LXL04_030328|LXL04_030328|OH1004|cDNA

ATGAATTTACAGACTCAAATGGCAGGACAGTTCTCAAGACAAGTTCCCAATCAATCTGGCACTTCATTACCTattcaacaacaacaacaacagaacATGATGCATAATTCTGAATCTTCCCATGCTTCACTAACCATGGAAACTGGTTTTGATAAAGCTCGAAGATTCATCCTAGATAGAATATATGAGTTCTTGATGCAAAGGCAACAAGCGCGTGAGATACCTCCAAATAATGTTTCGGATATTGTTAGACGATTGGA...

CDS

Download CDS FASTA

4389 bp · LXL04_030328|LXL04_030328|OH1004|CDS

ATGAATTTACAGACTCAAATGGCAGGACAGTTCTCAAGACAAGTTCCCAATCAATCTGGCACTTCATTACCTATTCAACAACAACAACAACAGAACATGATGCATAATTCTGAATCTTCCCATGCTTCACTAACCATGGAAACTGGTTTTGATAAAGCTCGAAGATTCATCCTAGATAGAATATATGAGTTCTTGATGCAAAGGCAACAAGCGCGTGAGATACCTCCAAATAATGTTTCGGATATTGTTAGACGATTGGA...

Protein

Download Protein FASTA

1462 aa · LXL04_030328|LXL04_030328|OH1004|PROTEIN

MNLQTQMAGQFSRQVPNQSGTSLPIQQQQQQNMMHNSESSHASLTMETGFDKARRFILDRIYEFLMQRQQAREIPPNNVSDIVRRLEEGLFKSATSKEEYMNLDTLEKRLHLLIRRPAQRYQQQQQQQQMNASTNTMIPTPGVPQSADVMVTSASGVNSGSYSMPMGNSQMMPTPGFNNSNPTTSNMSGDSTMVSQNQNQSQSQSQSQLQSQQQKQQQVVGGQNSRILHSLGSHMGVVGGIRSSLNQKAYGFQNGNNLGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030328`
TK1151 ID	TkA07G397570
OH-1004 ID	LXL04_030328
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030328

Location Chr06:114360573-114365842 (-)

Description Similar to HAC1: Histone acetyltransferase HAC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79000`	Acetyltransferase enzyme.	No verified direct reference in this release
`At1g16710`	Acetyltransferase enzyme.	No verified direct reference in this release
`At3g12980`	Acetyltransferase enzyme.	No verified direct reference in this release
`At1g55970`	Acetyltransferase enzyme.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0137500`	Acetyltransferase enzyme.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030328 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006473 protein acetylation Biological Process

GO:0009294 DNA-mediated transformation Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0000123 histone acetyltransferase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005667 transcription regulator complex Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003713 transcription coactivator activity Molecular Function

KEGG gene cross-reference

ath:AT1G16710

ath:AT1G79000

dosa:Os02g0137500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.899

Rank 1 · LXL04_030328 · OH-1004

Cytoplasm0.207

Rank 2 · LXL04_030328 · OH-1004

Cell membrane0.029

Rank 3 · LXL04_030328 · OH-1004

Mitochondrion0.023

Rank 4 · LXL04_030328 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_030328 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02135.22zf-TAZ466-535 aa

PF00628.36PHD788-828 aa

PF29847.1KAT3889-1118 aa

PF02135.22zf-TAZ1354-1424 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030328	`PF02135.22`	zf-TAZ	466	535	6.8e-28	97.6
LXL04_030328	`PF00628.36`	PHD	788	828	5e-06	27.2
LXL04_030328	`PF29847.1`	KAT3	889	1118	3.5e-77	260.6
LXL04_030328	`PF02135.22`	zf-TAZ	1354	1424	6.8e-28	97.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5X9`	Arabidopsis thaliana	Histone acetyltransferase HAC1	66.781%	Swiss-Prot	strong database homology
`Q9FWQ5`	Arabidopsis thaliana	Histone acetyltransferase HAC12	65.749%	Swiss-Prot	strong database homology
`Q9LE42`	Arabidopsis thaliana	Histone acetyltransferase HAC5	61.538%	Swiss-Prot	moderate database homology
`Q9LG11`	Arabidopsis thaliana	Histone acetyltransferase HAC4	57.820%	Swiss-Prot	moderate database homology
`Q6YXY2`	Oryza sativa subsp. japonica	Probable histone acetyltransferase HAC-like 1	66.002%	Swiss-Prot	moderate database homology

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