LXL04_030185 | RubberDandelionOmics

Gene overview

LXL04_030185

Reference: OH-1004 Chr: Chr06 Coordinates: 110177437-110182316 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2619 bp · LXL04_030185|LXL04_030185|OH1004|cDNA

ATGGAGAATTTCGAAGTTCTTGATTTGAAAGAAGAGTCCGATGCTCCTGAACCTGCTGTCAGAATTATGAGCCTAGAAAACTTGAATGATGCCGTTGACCAGTGTACATTCTCGGAGGCTAAACAACTCTCTGAACCTGACTTACAAAAGATTGAAGATGAGTCAATGCCTGATTCAGTCAATGCCATTAATGCTGTCCAAGAACTCTCCAAATGTCATTCGGGATCTGGAGCTAATTTAGCTGGACCAGATGTTAATGA...

CDS

Download CDS FASTA

2619 bp · LXL04_030185|LXL04_030185|OH1004|CDS

ATGGAGAATTTCGAAGTTCTTGATTTGAAAGAAGAGTCCGATGCTCCTGAACCTGCTGTCAGAATTATGAGCCTAGAAAACTTGAATGATGCCGTTGACCAGTGTACATTCTCGGAGGCTAAACAACTCTCTGAACCTGACTTACAAAAGATTGAAGATGAGTCAATGCCTGATTCAGTCAATGCCATTAATGCTGTCCAAGAACTCTCCAAATGTCATTCGGGATCTGGAGCTAATTTAGCTGGACCAGATGTTAATGA...

Protein

Download Protein FASTA

872 aa · LXL04_030185|LXL04_030185|OH1004|PROTEIN

MENFEVLDLKEESDAPEPAVRIMSLENLNDAVDQCTFSEAKQLSEPDLQKIEDESMPDSVNAINAVQELSKCHSGSGANLAGPDVNEVPEAEILLSTASTMPSNSNLNSPEPDEAVNLDLHEHERLYHRSLSTSCGIAEDDGIFCGPSSDHCTGDLEMDQMDTEDLTVVFYPDYIVYRDSYCTDCVLTFTSSYIKIEGSGSTPDGDEKIINLQWGVEDLLHIKSHWYELVQMAMVTIHVLTEDAEGISGVDLKFAIMGTN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030185`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030185

Location Chr06:110177437-110182316 (-)

Description Similar to ULP2B: Probable ubiquitin-like-specific protease 2B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09730`	Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.	No verified direct reference in this release
`At4g33620`	Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.	No verified direct reference in this release
`At1g10570`	Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.	SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis.2006 · DOI: 10.1104/pp.106.085415 Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058669
`At1g60220`	Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.	SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis.2006 · DOI: 10.1104/pp.106.085415 Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058669

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030185 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009561 megagametogenesis Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0016925 protein sumoylation Biological Process

GO:0016926 protein desumoylation Biological Process

GO:0048576 positive regulation of short-day photoperiodism, flowering Biological Process

GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process

GO:0055046 microgametogenesis Biological Process

GO:2000765 regulation of cytoplasmic translation Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G09730

ath:AT1G10570

ath:AT1G60220

ath:AT4G33620

spo:2542268

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.746

Rank 1 · LXL04_030185 · OH-1004

Cytoplasm0.303

Rank 2 · LXL04_030185 · OH-1004

Cell membrane0.049

Rank 3 · LXL04_030185 · OH-1004

Mitochondrion0.037

Rank 4 · LXL04_030185 · OH-1004

Endoplasmic reticulum0.031

Rank 5 · LXL04_030185 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25352.2PH_ULP167-280 aa

PF02902.26Peptidase_C48331-528 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030185	`PF25352.2`	PH_ULP	167	280	1.3e-36	125.9
LXL04_030185	`PF02902.26`	Peptidase_C48	331	528	2.6e-32	113.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L7S0`	Arabidopsis thaliana	Probable ubiquitin-like-specific protease 2B	43.881%	Swiss-Prot	moderate database homology
`Q0WKV8`	Arabidopsis thaliana	Probable ubiquitin-like-specific protease 2A	44.820%	Swiss-Prot	weak database homology
`Q8RWN0`	Arabidopsis thaliana	Ubiquitin-like-specific protease 1C	29.368%	Swiss-Prot	weak database homology
`Q2PS26`	Arabidopsis thaliana	Ubiquitin-like-specific protease 1D	29.779%	Swiss-Prot	weak database homology

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