LXL04_029172 | RubberDandelionOmics

Gene overview

LXL04_029172

Reference: OH-1004 Chr: Chr06 Coordinates: 82347545-82349020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

543 bp · LXL04_029172|LXL04_029172|OH1004|cDNA

ATGCCAAATAATCATAGTTATAAGAATGGCGGTGTGAAGACGAAGTCAATCTCATCTGCATCTTCATCTTATTCTTCTGGTAACAAATCTAAGCCGTCGGCAACCTCTGGTGGCCGCCGTAACAGCACCCGTTCCACTGGTAATTCCGCCGGTACACTTCACAAGGACACTCCTGGAGGTCTTTCACTCACCTTTGTTCTTGATACGTTCGAGTTTGATGAGGTTCTTACCGAATTTGCATCACAGAAGCGTGTTTATGA...

CDS

Download CDS FASTA

543 bp · LXL04_029172|LXL04_029172|OH1004|CDS

ATGCCAAATAATCATAGTTATAAGAATGGCGGTGTGAAGACGAAGTCAATCTCATCTGCATCTTCATCTTATTCTTCTGGTAACAAATCTAAGCCGTCGGCAACCTCTGGTGGCCGCCGTAACAGCACCCGTTCCACTGGTAATTCCGCCGGTACACTTCACAAGGACACTCCTGGAGGTCTTTCACTCACCTTTGTTCTTGATACGTTCGAGTTTGATGAGGTTCTTACCGAATTTGCATCACAGAAGCGTGTTTATGA...

Protein

Download Protein FASTA

180 aa · LXL04_029172|LXL04_029172|OH1004|PROTEIN

MPNNHSYKNGGVKTKSISSASSSYSSGNKSKPSATSGGRRNSTRSTGNSAGTLHKDTPGGLSLTFVLDTFEFDEVLTEFASQKRVYEVVAKPVVERVGQEREKEAAKKIESTLDHLNRRKCSRQSCLVLYRTPKTNLKGFILEERKAERISFSKKGNLKRFLLCKVSFLEETKFEGISLV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029172`
TK1151 ID	TkA07G282260
OH-1004 ID	LXL04_029172
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 28.037 / OH-1004 16.667 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029172

Location Chr06:82347545-82349020 (-)

Description Similar to KINUA: Kinesin-like protein KIN-UA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12430`	Kinesin-like protein KIN-UA.	No verified direct reference in this release
`At1g01950`	Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0137100`	Kinesin-like protein KIN-UB.	No verified direct reference in this release
`Os03g0152900`	Kinesin-like protein KIN-UA.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029172 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0030705 cytoskeleton-dependent intracellular transport Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

GO:0008574 plus-end-directed microtubule motor activity Molecular Function

KEGG gene cross-reference

ath:AT1G01950

ath:AT1G12430

dosa:Os03g0152900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.472

Rank 1 · LXL04_029172 · OH-1004

Cytoplasm0.426

Rank 2 · LXL04_029172 · OH-1004

Cell membrane0.081

Rank 3 · LXL04_029172 · OH-1004

Mitochondrion0.075

Rank 4 · LXL04_029172 · OH-1004

Endoplasmic reticulum0.045

Rank 5 · LXL04_029172 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ06`	Arabidopsis thaliana	Kinesin-like protein KIN-UA	93.333%	Swiss-Prot	weak database homology
`Q9LPC6`	Arabidopsis thaliana	Kinesin-like protein KIN-UB	86.667%	Swiss-Prot	weak database homology
`Q5VQ09`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-UB	90.000%	Swiss-Prot	weak database homology
`Q0DV28`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-UA	73.333%	Swiss-Prot	weak database homology

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