LXL04_028341 | RubberDandelionOmics

Gene overview

LXL04_028341

Reference: OH-1004 Chr: Chr06 Coordinates: 38480395-38490278 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1086 bp · LXL04_028341|LXL04_028341|OH1004|cDNA

ATGAGGTGGAGAGTTATGATCGGAAAAGACACCATGTTAGGCAGCAGAACCACCACAAACACAACCACTTTCCTCCAATGGGTTTGCTATCGTCATCATCAACAAGAATTTCAAGCTCAAACCTCACTCGCTCACGTGCCATCGTCCCCAGCTGCATCCCCTTCCTTGCTTTTCTTTCAGTCTCCTTTTTCCTTCTCTACCAGGTCGACGTTTATATTGCTCGAAGCAGAAAAGGTCCTCGCCGCTACCAACCCACATCT...

CDS

Download CDS FASTA

1086 bp · LXL04_028341|LXL04_028341|OH1004|CDS

ATGAGGTGGAGAGTTATGATCGGAAAAGACACCATGTTAGGCAGCAGAACCACCACAAACACAACCACTTTCCTCCAATGGGTTTGCTATCGTCATCATCAACAAGAATTTCAAGCTCAAACCTCACTCGCTCACGTGCCATCGTCCCCAGCTGCATCCCCTTCCTTGCTTTTCTTTCAGTCTCCTTTTTCCTTCTCTACCAGGTCGACGTTTATATTGCTCGAAGCAGAAAAGGTCCTCGCCGCTACCAACCCACATCT...

Protein

Download Protein FASTA

361 aa · LXL04_028341|LXL04_028341|OH1004|PROTEIN

MRWRVMIGKDTMLGSRTTTNTTTFLQWVCYRHHQQEFQAQTSLAHVPSSPAASPSLLFFQSPFSFSTRSTFILLEAEKVLAATNPHLTCLAQFPEKVITNGTFDRLFEITWGDDHANIHEEGEVLTLSLDKRSGSGFRSKNEYLFGKIDMQIRLVQGNSAGTVTAYYLSSEGDFHDEIDFEFLGNTSGDPYTLHTNVYSQGKGDREQQFFLWFDPTTDFHTYTIIWTPQRILFYVDEIPIREFRNHEAIGVPFPNTQPMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028341`
TK1151 ID	TkA07G144650
OH-1004 ID	LXL04_028341
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	85.400
Protein coverage (%)	TK1151 95.870 / OH-1004 87.812 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028341

Location Chr06:38480395-38490278 (+)

Description Similar to XTH25: Probable xyloglucan endotransglucosylase/hydrolase protein 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57550`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g57560`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase.1995 · DOI: 10.1105/tpc.7.10.1555
`At4g25810`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028341 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009612 response to mechanical stimulus Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009835 fruit ripening Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0070726 cell wall assembly Biological Process

KEGG gene cross-reference

ath:AT4G25810

ath:AT5G57550

ath:AT5G57560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.247

Rank 1 · LXL04_028341 · OH-1004

Lysosome / Vacuole0.190

Rank 2 · LXL04_028341 · OH-1004

Extracellular0.189

Rank 3 · LXL04_028341 · OH-1004

Golgi apparatus0.171

Rank 4 · LXL04_028341 · OH-1004

Cytoplasm0.158

Rank 5 · LXL04_028341 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_16105-284 aa

PF06955.20XET_C315-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028341	`PF00722.29`	Glyco_hydro_16	105	284	3e-67	226.2
LXL04_028341	`PF06955.20`	XET_C	315	358	1.5e-14	54.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38907`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 25	62.791%	Swiss-Prot	strong database homology
`Q38857`	Arabidopsis thaliana	Xyloglucan endotransglucosylase/hydrolase protein 22	59.058%	Swiss-Prot	strong database homology
`Q38910`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 23	62.934%	Swiss-Prot	strong database homology

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