LXL04_028201 | RubberDandelionOmics

Gene overview

LXL04_028201

Reference: OH-1004 Chr: Chr06 Coordinates: 34323170-34326130 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1356 bp · LXL04_028201|LXL04_028201|OH1004|cDNA

ATGAACATATATAGAGGAATTTCTCGGATTTCGAGAACAACGAGCTGTTATTACCGCTGTCGATGGTCGTGCTACTCTTCTCCGCATCAGCAATTGTCTCACTCCAGTCATTTCAAGTCTCCCATGGAGTCCTCTGAAAAGAAGCCATGGCCATTGACCTTTCCAAATTTTGAGAAACTGATATCGATTGTAATCTCTTCCTCATATGAAAATTCCATTATACGGAAGGGTTCTAAGGTTTTGGGTTGCACAGTAAACTA...

CDS

Download CDS FASTA

1356 bp · LXL04_028201|LXL04_028201|OH1004|CDS

ATGAACATATATAGAGGAATTTCTCGGATTTCGAGAACAACGAGCTGTTATTACCGCTGTCGATGGTCGTGCTACTCTTCTCCGCATCAGCAATTGTCTCACTCCAGTCATTTCAAGTCTCCCATGGAGTCCTCTGAAAAGAAGCCATGGCCATTGACCTTTCCAAATTTTGAGAAACTGATATCGATTGTAATCTCTTCCTCATATGAAAATTCCATTATACGGAAGGGTTCTAAGGTTTTGGGTTGCACAGTAAACTA...

Protein

Download Protein FASTA

451 aa · LXL04_028201|LXL04_028201|OH1004|PROTEIN

MNIYRGISRISRTTSCYYRCRWSCYSSPHQQLSHSSHFKSPMESSEKKPWPLTFPNFEKLISIVISSSYENSIIRKGSKVLGCTVNYSLISRHFSSGVQPQYERSSSEDQVDPFSLVADELSVVANRLRAMVVAEVPKLASAAEYFFKMGVEGKRFRPTVILLMATALNVQISKPASEGVVDMFSTELRLRQQSIAEITEMIHVASLLHDDVLDDADTRRGIGSLNYVMGNKLAVLAGDFLLSRACITLASLKNTEVVSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028201`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028201

Location Chr06:34323170-34326130 (+)

Description Similar to SPS3: Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34630`	May be involved in the supply of solanesyl diphosphate for ubiquinone-9 (UQ-9) biosynthesis in mitochondria.	Gene network reconstruction identifies the authentic trans-prenyl diphosphate synthase that makes the solanesyl moiety of ubiquinone-9 in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2011.04796.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0678200`	Involved in the supply of solanesyl diphosphate for ubiquinone-9 (UQ-9) biosynthesis in mitochondria.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028201 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006744 ubiquinone biosynthetic process Biological Process

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0010236 plastoquinone biosynthetic process Biological Process

GO:0046165 alcohol biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component

GO:0032476 polyprenyl diphosphate synthase complex Cellular Component

KEGG gene cross-reference

ath:AT2G34630

dosa:Os06g0678200

mmu:56075

ncr:NCU02305

yli:2909963

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.545

Rank 1 · LXL04_028201 · OH-1004

Plastid0.328

Rank 2 · LXL04_028201 · OH-1004

Cytoplasm0.123

Rank 3 · LXL04_028201 · OH-1004

Peroxisome0.054

Rank 4 · LXL04_028201 · OH-1004

Nucleus0.053

Rank 5 · LXL04_028201 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00348.23polyprenyl_synt138-392 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028201	`PF00348.23`	polyprenyl_synt	138	392	6.3e-67	226.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5HZ00`	Arabidopsis thaliana	Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial	73.046%	Swiss-Prot	strong database homology
`Q653T6`	Oryza sativa subsp. japonica	Solanesyl-diphosphate synthase 1, mitochondrial	71.618%	Swiss-Prot	strong database homology

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