LXL04_028178 | RubberDandelionOmics

Gene overview

LXL04_028178

Reference: OH-1004 Chr: Chr06 Coordinates: 33318673-33320262 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1590 bp · LXL04_028178|LXL04_028178|OH1004|cDNA

ATGTCTCATCTCTTTGGATTAGTCTTTGTCTTCCTCTTTGCCCATTCATTAGCAACATCCGATAACGCCCATGAAAACTTCATCCGATGCCTTATCAATTCACCGGACCTTACTTCTCCAATCGCCGGAGAAATCTACACTCCAGCCAACGCTACCTTTCCCGCCGTCTTGCAAGCCTACATTCGTAACCTCAGGTTCAATGAATCCACCACCCCAAAACCTGCAATTATTGTCACCGCCATAGACCTTTCACATGTCCG...

CDS

Download CDS FASTA

1590 bp · LXL04_028178|LXL04_028178|OH1004|CDS

ATGTCTCATCTCTTTGGATTAGTCTTTGTCTTCCTCTTTGCCCATTCATTAGCAACATCCGATAACGCCCATGAAAACTTCATCCGATGCCTTATCAATTCACCGGACCTTACTTCTCCAATCGCCGGAGAAATCTACACTCCAGCCAACGCTACCTTTCCCGCCGTCTTGCAAGCCTACATTCGTAACCTCAGGTTCAATGAATCCACCACCCCAAAACCTGCAATTATTGTCACCGCCATAGACCTTTCACATGTCCG...

Protein

Download Protein FASTA

529 aa · LXL04_028178|LXL04_028178|OH1004|PROTEIN

MSHLFGLVFVFLFAHSLATSDNAHENFIRCLINSPDLTSPIAGEIYTPANATFPAVLQAYIRNLRFNESTTPKPAIIVTAIDLSHVRASIKCGKQHKLLMKTRSGGHDYEGLSYVADQPFFILDLFNFRSINVSIEEETAWVQTGATLGELFYRISEKSNTHGFPAGVCHTVGVGGHFSGGGYGNMMRKYGLSVDNIIDAEIIDVNGRLLNRESMGEDLFWAITGGGGVSFGVVISYKVNLVRVPDTVTVFQVRRISEEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028178`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028178

Location Chr06:33318673-33320262 (-)

Description Similar to At1g30700: Berberine bridge enzyme-like 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30700`	Berberine bridge enzyme-like 8.	No verified direct reference in this release
`At4g20840`	Berberine bridge enzyme-like 21.	No verified direct reference in this release
`At1g34575`	Berberine bridge enzyme-like 14.	No verified direct reference in this release
`At1g30710`	Berberine bridge enzyme-like 9.	No verified direct reference in this release
`At1g30720`	Berberine bridge enzyme-like 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028178 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0071456 cellular response to hypoxia Biological Process

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor Molecular Function

GO:0071949 FAD binding Molecular Function

KEGG gene cross-reference

ath:AT1G30700

ath:AT1G30710

ath:AT1G30720

ath:AT1G34575

ath:AT4G20840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.438

Rank 1 · LXL04_028178 · OH-1004

Endoplasmic reticulum0.157

Rank 2 · LXL04_028178 · OH-1004

Lysosome / Vacuole0.151

Rank 3 · LXL04_028178 · OH-1004

Cytoplasm0.135

Rank 4 · LXL04_028178 · OH-1004

Cell membrane0.094

Rank 5 · LXL04_028178 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_474-210 aa

PF08031.18BBE464-522 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028178	`PF01565.29`	FAD_binding_4	74	210	8.9e-21	74.8
LXL04_028178	`PF08031.18`	BBE	464	522	3.7e-19	69.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SA85`	Arabidopsis thaliana	Berberine bridge enzyme-like 8	57.116%	Swiss-Prot	strong database homology
`Q9SVG3`	Arabidopsis thaliana	Berberine bridge enzyme-like 21	53.740%	Swiss-Prot	strong database homology
`F4HV09`	Arabidopsis thaliana	Berberine bridge enzyme-like 14	51.923%	Swiss-Prot	strong database homology
`Q9SA86`	Arabidopsis thaliana	Berberine bridge enzyme-like 9	50.760%	Swiss-Prot	strong database homology
`Q9SA87`	Arabidopsis thaliana	Berberine bridge enzyme-like 10	50.902%	Swiss-Prot	strong database homology

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