LXL04_028145 | RubberDandelionOmics

Gene overview

LXL04_028145

Reference: OH-1004 Chr: Chr06 Coordinates: 32450842-32455910 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3278 bp · LXL04_028145|LXL04_028145|OH1004|cDNA

ATGGCGTCTGCTTCGTCCTCTGCTTCTCTGCTTAACCATACCAGCTGCTATGATGTTTTTTTAAGCTTTAGAGGCCAAGATACTCGCAATTCTTTTACCGATCATCTCTATGTGGCTTTAGTGCGAGCAGGACTCCGCACTTTTAGGGATAATGATGATATCGACAGAGGTCAAGAACTCAAGCCGGAAATCGAGAGAGCGATCATTGAATCTAGGGCTTCTATAGTTGTATTGTCAGAGAAATATGCGAATTCCAGCTG...

CDS

Download CDS FASTA

3036 bp · LXL04_028145|LXL04_028145|OH1004|CDS

ATGGCGTCTGCTTCGTCCTCTGCTTCTCTGCTTAACCATACCAGCTGCTATGATGTTTTTTTAAGCTTTAGAGGCCAAGATACTCGCAATTCTTTTACCGATCATCTCTATGTGGCTTTAGTGCGAGCAGGACTCCGCACTTTTAGGGATAATGATGATATCGACAGAGGTCAAGAACTCAAGCCGGAAATCGAGAGAGCGATCATTGAATCTAGGGCTTCTATAGTTGTATTGTCAGAGAAATATGCGAATTCCAGCTG...

Protein

Download Protein FASTA

1011 aa · LXL04_028145|LXL04_028145|OH1004|PROTEIN

MASASSSASLLNHTSCYDVFLSFRGQDTRNSFTDHLYVALVRAGLRTFRDNDDIDRGQELKPEIERAIIESRASIVVLSEKYANSSWCLDELLLILEQRRSFNHFVLPIFHHVDPSDVRNQRQSFVIEVEDGVEGTKWTEYNVNRWKAALTEVADLTGMVVSGSETDFIAKVVDAIDLKLDLKLVSTPARLIGMDARAIGIDSWLKNEHADANVLAICGMGGSGKTTLAQFLYNSNKQKSESSSFIEEIGKHYKQPHGLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028145`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028145

Location Chr06:32450842-32455910 (-)

Description Similar to RUN1: Disease resistance protein RUN1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11170`	Putative disease resistance protein At4g11170.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028145 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010193 response to ozone Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G11170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.440

Rank 1 · LXL04_028145 · OH-1004

Nucleus0.338

Rank 2 · LXL04_028145 · OH-1004

Cell membrane0.284

Rank 3 · LXL04_028145 · OH-1004

Endoplasmic reticulum0.079

Rank 4 · LXL04_028145 · OH-1004

Plastid0.048

Rank 5 · LXL04_028145 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR17-180 aa

PF13676.12TIR_219-116 aa

PF00931.29NB-ARC204-367 aa

PF23282.2WHD_ROQ1450-520 aa

PF25013.1LRR_Zer-1641-700 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028145	`PF01582.26`	TIR	17	180	1.2e-40	140.0
LXL04_028145	`PF13676.12`	TIR_2	19	116	8.2e-16	59.3
LXL04_028145	`PF00931.29`	NB-ARC	204	367	1.5e-18	67.6
LXL04_028145	`PF23282.2`	WHD_ROQ1	450	520	6.6e-12	46.1
LXL04_028145	`PF25013.1`	LRR_Zer-1	641	700	9.9e-06	26.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82500`	Arabidopsis thaliana	Putative disease resistance protein At4g11170	30.151%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card