LXL04_027452 | RubberDandelionOmics

Gene overview

LXL04_027452

Reference: OH-1004 Chr: Chr06 Coordinates: 16293261-16302477 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3294 bp · LXL04_027452|LXL04_027452|OH1004|cDNA

ATGGAGATCACGGCCAGGGGTCTCGGTGCTGATATCCCGAACTACAGCAGATCGGGTGTTTGGGAGGTAATCTACCATGTTAACGAGGACCTGGGTAAGGTTGGGATTAACCTGAATGATCTGATGCGTTTCGATGATTCTAGAAACTGCTGGACTTGGAGCGGAGAGGCGGACGGGCGTTTCTCGGTCAGGTCTTTGAGAAAGTTGTTTGACTACCACTCTTTGGAGAGCTGTCAAACTCAGACTATCTGGTGCAACGC...

CDS

Download CDS FASTA

3294 bp · LXL04_027452|LXL04_027452|OH1004|CDS

ATGGAGATCACGGCCAGGGGTCTCGGTGCTGATATCCCGAACTACAGCAGATCGGGTGTTTGGGAGGTAATCTACCATGTTAACGAGGACCTGGGTAAGGTTGGGATTAACCTGAATGATCTGATGCGTTTCGATGATTCTAGAAACTGCTGGACTTGGAGCGGAGAGGCGGACGGGCGTTTCTCGGTCAGGTCTTTGAGAAAGTTGTTTGACTACCACTCTTTGGAGAGCTGTCAAACTCAGACTATCTGGTGCAACGC...

Protein

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1097 aa · LXL04_027452|LXL04_027452|OH1004|PROTEIN

MEITARGLGADIPNYSRSGVWEVIYHVNEDLGKVGINLNDLMRFDDSRNCWTWSGEADGRFSVRSLRKLFDYHSLESCQTQTIWCNAVPRKINLFVWRMRRDRLPTKDGLSKRGVMVNSELCPACNCFPESSDHLFLRCSTAKELLAHLRIAGLRFQISTPATRSWKCSRWLKINCGQRSSVLNLSHYSFYRLNQEKGCTKVEEATGVAPPLDFAAGKARVFSNPNLIMRIILVLLAVLIHAQAIDITKLRLFAAKNNLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027452`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027452

Location Chr06:16293261-16302477 (-)

Description Similar to At5g45950: GDSL esterase/lipase At5g45950

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45950`	GDSL esterase/lipase At5g45950.	No verified direct reference in this release
`At5g45960`	GDSL esterase/lipase At5g45960.	No verified direct reference in this release
`At1g75900`	GDSL esterase/lipase EXL3.	No verified direct reference in this release
`At2g04570`	GDSL esterase/lipase At2g04570.	No verified direct reference in this release
`At4g26790`	GDSL esterase/lipase At4g26790.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027452 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

GO:0016298 lipase activity Molecular Function

GO:0016746 acyltransferase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G75900

ath:AT2G04570

ath:AT4G26790

ath:AT5G45950

ath:AT5G45960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545

Rank 1 · LXL04_027452 · OH-1004

Nucleus0.309

Rank 2 · LXL04_027452 · OH-1004

Cell membrane0.132

Rank 3 · LXL04_027452 · OH-1004

Endoplasmic reticulum0.091

Rank 4 · LXL04_027452 · OH-1004

Plastid0.055

Rank 5 · LXL04_027452 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966.12zf-RVT61-144 aa

PF00657.29Lipase_GDSL262-542 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027452	`PF13966.12`	zf-RVT	61	144	1.7e-16	61.4
LXL04_027452	`PF00657.29`	Lipase_GDSL	262	542	2.3e-26	94.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ41`	Arabidopsis thaliana	GDSL esterase/lipase At5g45950	46.765%	Swiss-Prot	weak database homology
`Q9FJ40`	Arabidopsis thaliana	GDSL esterase/lipase At5g45960	42.722%	Swiss-Prot	weak database homology
`Q94CH6`	Arabidopsis thaliana	GDSL esterase/lipase EXL3	40.000%	Swiss-Prot	weak database homology
`Q9SJB4`	Arabidopsis thaliana	GDSL esterase/lipase At2g04570	39.130%	Swiss-Prot	weak database homology
`Q8VY93`	Arabidopsis thaliana	GDSL esterase/lipase At4g26790	38.742%	Swiss-Prot	weak database homology

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