LXL04_027359 | RubberDandelionOmics

Gene overview

LXL04_027359

Reference: OH-1004 Chr: Chr06 Coordinates: 14223350-14226324 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1629 bp · LXL04_027359|LXL04_027359|OH1004|cDNA

ATGTTCAGTAGTTACATGGCTCCTGATGATCGGTTTCATGGCAATGCTATTGAAATTAATGCTCCTAAAATTGTATATCTAACGATCCAAGGTAGTTTGATTTTGTGGAAGCTTTTCTTGGGAGATTTGTCTTCTTTAGTTGCAGCTGACCTAGATTATgattattttacaaaattcgGGGCTTTGGAAATGCATGAAAAAGCGGAAGAAGAGATGCTTCTAAGATTTATACGAAATTTTGGACATGTCCATGAGCTTAA...

CDS

Download CDS FASTA

1629 bp · LXL04_027359|LXL04_027359|OH1004|CDS

ATGTTCAGTAGTTACATGGCTCCTGATGATCGGTTTCATGGCAATGCTATTGAAATTAATGCTCCTAAAATTGTATATCTAACGATCCAAGGTAGTTTGATTTTGTGGAAGCTTTTCTTGGGAGATTTGTCTTCTTTAGTTGCAGCTGACCTAGATTATGATTATTTTACAAAATTCGGGGCTTTGGAAATGCATGAAAAAGCGGAAGAAGAGATGCTTCTAAGATTTATACGAAATTTTGGACATGTCCATGAGCTTAA...

Protein

Download Protein FASTA

542 aa · LXL04_027359|LXL04_027359|OH1004|PROTEIN

MFSSYMAPDDRFHGNAIEINAPKIVYLTIQGSLILWKLFLGDLSSLVAADLDYDYFTKFGALEMHEKAEEEMLLRFIRNFGHVHELNIGESCHQVLCRLVAKGFNLTPNMRFPGVTYDCCDSDSSSVQFFMGSAAAMETAEEGQNRRKILKTVDGCEADRISTLPESLIVEILSRLPSTEDAIRTGALSKPWKHRWNSVTNLIFKEPDNRPTVGRKNPSSRSDFYSFVDKTLSQCRQEKLKKFKVEATYDSRFESQVNSW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027359`
TK1151 ID	TkA07G052700
OH-1004 ID	LXL04_027359
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 79.343 / OH-1004 31.181 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027359

Location Chr06:14223350-14226324 (+)

Description Similar to At5g03100: F-box protein At5g03100

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release
`At3g28410`	Putative F-box/LRR-repeat protein At3g28410.	No verified direct reference in this release
`At5g02930`	Putative F-box/LRR-repeat protein At5g02930.	No verified direct reference in this release
`At1g49610`	Putative F-box protein At1g49610.	No verified direct reference in this release
`At5g02700`	Putative F-box/LRR-repeat protein At5g02700.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027359 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT1G49610

ath:AT3G28410

ath:AT5G02700

ath:AT5G02930

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.878

Rank 1 · LXL04_027359 · OH-1004

Cytoplasm0.179

Rank 2 · LXL04_027359 · OH-1004

Cell membrane0.034

Rank 3 · LXL04_027359 · OH-1004

Endoplasmic reticulum0.026

Rank 4 · LXL04_027359 · OH-1004

Plastid0.013

Rank 5 · LXL04_027359 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF1240-401 aa

PF24758.2LRR_At5g56370258-395 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027359	`PF23622.2`	LRR_At1g61320_AtMIF1	240	401	3.1e-18	67.0
LXL04_027359	`PF24758.2`	LRR_At5g56370	258	395	2.5e-13	50.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	32.899%	Swiss-Prot	moderate database homology
`Q9LSJ3`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g28410	28.446%	Swiss-Prot	weak database homology
`Q9LYZ2`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02930	28.144%	Swiss-Prot	weak database homology
`Q9FX89`	Arabidopsis thaliana	Putative F-box protein At1g49610	29.912%	Swiss-Prot	weak database homology
`Q9LZ15`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02700	28.402%	Swiss-Prot	weak database homology

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