LXL04_027333 | RubberDandelionOmics

Gene overview

LXL04_027333

Reference: OH-1004 Chr: Chr06 Coordinates: 13749241-13756697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3318 bp · LXL04_027333|LXL04_027333|OH1004|cDNA

ATGACCTACTTCCACCAAAAGGTTTCAACCCTAGCCATGACCTTGCCCTTCCTCATACTCCTAGTAGCCATGGTCTCTCGAGCCACTTCACGCACCCTTACTGACCAAACCATGTTCGTCAGACACGACCAATGGATGGCTGACCATGGGCGTGTTTATACagatgaaaaagaaaaacaacaGCGGTTTCAGATATTTAGAAACAACGTTGCCTATATTGAATCACATAATAGTCGTTCTGACCAAAGTTACACACTTGA...

CDS

Download CDS FASTA

3318 bp · LXL04_027333|LXL04_027333|OH1004|CDS

ATGACCTACTTCCACCAAAAGGTTTCAACCCTAGCCATGACCTTGCCCTTCCTCATACTCCTAGTAGCCATGGTCTCTCGAGCCACTTCACGCACCCTTACTGACCAAACCATGTTCGTCAGACACGACCAATGGATGGCTGACCATGGGCGTGTTTATACAGATGAAAAAGAAAAACAACAGCGGTTTCAGATATTTAGAAACAACGTTGCCTATATTGAATCACATAATAGTCGTTCTGACCAAAGTTACACACTTGA...

Protein

Download Protein FASTA

1105 aa · LXL04_027333|LXL04_027333|OH1004|PROTEIN

MTYFHQKVSTLAMTLPFLILLVAMVSRATSRTLTDQTMFVRHDQWMADHGRVYTDEKEKQQRFQIFRNNVAYIESHNSRSDQSYTLEVNKFADLTNEEFRASRNGYKKQLVSSAVSGLFRYANVSAVPNEVDWRKEGVVTPVKDQGQCGKFVVNNTQYTTQYVVCSTQYTNFDTIYRINEFGILFVDWKSGCCWAFSAVAAMEGINKLKNGKLVSLSEQELVDCDIDGIDQGCEGGLMENAFQFIEKRMGLAAESVYPYT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027333`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027333

Location Chr06:13749241-13756697 (-)

Description Similar to ATG7: Ubiquitin-like modifier-activating enzyme atg7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45900`	E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy.	The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana.2002 · DOI: 10.1074/jbc.m204630200 Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis.2013 · DOI: 10.1105/tpc.113.116947 Delayed degradation of chlorophylls and photosynthetic proteins in Arabidopsis autophagy mutants during stress-induced leaf yellowing.2014 · DOI: 10.1093/jxb/eru008

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027333 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0000422 autophagy of mitochondrion Biological Process

GO:0000423 mitophagy Biological Process

GO:0006497 protein lipidation Biological Process

GO:0006914 autophagy Biological Process

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0009267 cellular response to starvation Biological Process

GO:0009749 response to glucose Biological Process

GO:0009791 post-embryonic development Biological Process

KEGG gene cross-reference

ath:AT5G45900

gga:415961

hsa:10533

mmu:74244

rno:312647

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.319

Rank 1 · LXL04_027333 · OH-1004

Nucleus0.153

Rank 2 · LXL04_027333 · OH-1004

Peroxisome0.145

Rank 3 · LXL04_027333 · OH-1004

Plastid0.136

Rank 4 · LXL04_027333 · OH-1004

Mitochondrion0.121

Rank 5 · LXL04_027333 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08246.18Inhibitor_I2942-99 aa

PF00112.30Peptidase_C1191-384 aa

PF16420.11ATG7_N422-731 aa

PF00899.28ThiF748-992 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027333	`PF08246.18`	Inhibitor_I29	42	99	2e-21	76.8
LXL04_027333	`PF00112.30`	Peptidase_C1	191	384	1.2e-71	242.0
LXL04_027333	`PF16420.11`	ATG7_N	422	731	1.6e-97	327.5
LXL04_027333	`PF00899.28`	ThiF	748	992	4.3e-35	121.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94CD5`	Arabidopsis thaliana	Ubiquitin-like modifier-activating enzyme atg7	68.750%	Swiss-Prot	moderate database homology

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