LXL04_026602 | RubberDandelionOmics

Gene overview

LXL04_026602

Reference: OH-1004 Chr: Chr05 Coordinates: 129377720-129380816 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2967 bp · LXL04_026602|LXL04_026602|OH1004|cDNA

ATGTCAAAGCAGCCCATTCTACCTTCTTCCCGCCAAATTACATATGTATTCTTCTTATTATTTTCCTTCGCCGGCATATTTTTCCGGTCAGTATTCTGCTCTTCCTCGTCTGTTGAAGTCCACGCACTGATTGATTTCAAGAAACAGCTAAAAGACCCTTTGAATTACTTGGATTCATGGAAGATCACGGAATCCCCTTGTCAATTTTACGGGGTTTCTTGCGACGATCAAACGGGTCGGGTGGTGGGGATTTCGTTGAA...

CDS

Download CDS FASTA

2967 bp · LXL04_026602|LXL04_026602|OH1004|CDS

ATGTCAAAGCAGCCCATTCTACCTTCTTCCCGCCAAATTACATATGTATTCTTCTTATTATTTTCCTTCGCCGGCATATTTTTCCGGTCAGTATTCTGCTCTTCCTCGTCTGTTGAAGTCCACGCACTGATTGATTTCAAGAAACAGCTAAAAGACCCTTTGAATTACTTGGATTCATGGAAGATCACGGAATCCCCTTGTCAATTTTACGGGGTTTCTTGCGACGATCAAACGGGTCGGGTGGTGGGGATTTCGTTGAA...

Protein

Download Protein FASTA

988 aa · LXL04_026602|LXL04_026602|OH1004|PROTEIN

MSKQPILPSSRQITYVFFLLFSFAGIFFRSVFCSSSSVEVHALIDFKKQLKDPLNYLDSWKITESPCQFYGVSCDDQTGRVVGISLNYKSLSGKISPALGALQSLKSLVIPSNYIYGELPTALVNCSDLRVLNVTANNITGVLPDLSKLQKLEILDVSNNYLTGDFPTWVGSLTRLSKLGLNDNNFEEGGIPENIGNLTNLRWLNLGGISLTGEIPKSVFDLKDLETLDLSSNKISGDFPVEITKLRNLLKIELFGNRLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026602`
TK1151 ID	TkA06G001020
OH-1004 ID	LXL04_026602
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026602

Location Chr05:129377720-129380816 (-)

Description Similar to CEPR2: Receptor protein-tyrosine kinase CEPR2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72180`	Receptor kinase involved in the perception of C-terminally encoded plant signaling peptide (CEP) and subsequent regulation of root and shoot development.	No verified direct reference in this release
`At1g09970`	Plays a role in pattern-triggered immunity (PTI) signaling induced by pathogen-associated molecular patterns (PAMPs).	RLK7, a leucine-rich repeat receptor-like kinase, is required for proper germination speed and tolerance to oxidative stress in Arabidopsis thaliana.2010 · DOI: 10.1007/s00425-010-1260-4 The secreted peptide PIP1 amplifies immunity through receptor-like kinase 7.2014 · DOI: 10.1371/journal.ppat.1004331
`At1g28440`	Receptor-like protein kinase HSL1.	No verified direct reference in this release
`At5g49660`	Receptor kinase involved in the perception of C-terminally encoded plant signaling peptide (CEP) and subsequent regulation of root and shoot development.	XYLEM INTERMIXED WITH PHLOEM1, a leucine-rich repeat receptor-like kinase required for stem growth and vascular development in Arabidopsis thaliana.2012 · DOI: 10.1007/s00425-011-1489-6 CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.2016 · DOI: 10.1093/jxb/erw231
`At3g19700`	Modulates the seed size by negatively regulating the cellularization of syncytial endosperm.	MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis.2005 · DOI: 10.1073/pnas.0508418102

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026602 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009845 seed germination Biological Process

GO:0009960 endosperm development Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010311 lateral root formation Biological Process

GO:0010555 response to mannitol Biological Process

GO:0031540 regulation of anthocyanin biosynthetic process Biological Process

GO:0045087 innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048437 floral organ development Biological Process

KEGG gene cross-reference

ath:AT1G09970

ath:AT1G28440

ath:AT1G72180

ath:AT3G19700

ath:AT5G49660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.855

Rank 1 · LXL04_026602 · OH-1004

Endoplasmic reticulum0.094

Rank 2 · LXL04_026602 · OH-1004

Cytoplasm0.059

Rank 3 · LXL04_026602 · OH-1004

Nucleus0.034

Rank 4 · LXL04_026602 · OH-1004

Lysosome / Vacuole0.034

Rank 5 · LXL04_026602 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_239-75 aa

PF23598.2LRR_1498-181 aa

PF13855.13LRR_8129-186 aa

PF12799.14LRR_4129-163 aa

PF13855.13LRR_8151-208 aa

PF23598.2LRR_14185-275 aa

PF12799.14LRR_4199-236 aa

PF13855.13LRR_8200-259 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026602	`PF08263.18`	LRRNT_2	39	75	1.1e-09	39.1
LXL04_026602	`PF23598.2`	LRR_14	98	181	2.3e-32	112.8
LXL04_026602	`PF13855.13`	LRR_8	129	186	3.4e-34	117.1
LXL04_026602	`PF12799.14`	LRR_4	129	163	2.8e-27	94.8
LXL04_026602	`PF13855.13`	LRR_8	151	208	3.4e-34	117.1
LXL04_026602	`PF23598.2`	LRR_14	185	275	2.3e-32	112.8
LXL04_026602	`PF12799.14`	LRR_4	199	236	2.8e-27	94.8
LXL04_026602	`PF13855.13`	LRR_8	200	259	3.4e-34	117.1
LXL04_026602	`PF23598.2`	LRR_14	263	376	2.3e-32	112.8
LXL04_026602	`PF12799.14`	LRR_4	439	477	2.8e-27	94.8
LXL04_026602	`PF13855.13`	LRR_8	440	497	3.4e-34	117.1
LXL04_026602	`PF23598.2`	LRR_14	455	540	2.3e-32	112.8
LXL04_026602	`PF13855.13`	LRR_8	488	547	3.4e-34	117.1
LXL04_026602	`PF00069.32`	Pkinase	693	895	8e-42	144.2
LXL04_026602	`PF07714.24`	PK_Tyr_Ser-Thr	694	963	3.2e-37	128.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7T7`	Arabidopsis thaliana	Receptor protein-tyrosine kinase CEPR2	52.840%	Swiss-Prot	strong database homology
`F4I2N7`	Arabidopsis thaliana	Receptor-like protein kinase 7	39.579%	Swiss-Prot	moderate database homology
`Q9SGP2`	Arabidopsis thaliana	Receptor-like protein kinase HSL1	38.407%	Swiss-Prot	moderate database homology
`Q9FGL5`	Arabidopsis thaliana	Receptor protein-tyrosine kinase CEPR1	38.232%	Swiss-Prot	moderate database homology
`Q9LJM4`	Arabidopsis thaliana	Receptor-like protein kinase HAIKU2	38.431%	Swiss-Prot	moderate database homology

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