Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1530 bp · LXL04_026556|LXL04_026556|OH1004|cDNA
ATGACTATTCTTATTTGGAACCAACCTCATGGCCATTTTCAAGGCCACCTTCTTTTGTTGCCAAGCACCACAATTTCTTTAGTAGAATGGGAAAACGAAATCAGGAAATCTAAGAGCCTATTGCTACTAATTCTAGCAACACAATCCTTGGAAGCTCGTTGGTTGCCGTGTCAGCTAAATGGATCATGTTCACTTATAGAAACAATAAGAGAACAAGATGATGGCACAATATGGGCGGTTCTTGTTGCTGGATCAAATGG...
1530 bp · LXL04_026556|LXL04_026556|OH1004|CDS
ATGACTATTCTTATTTGGAACCAACCTCATGGCCATTTTCAAGGCCACCTTCTTTTGTTGCCAAGCACCACAATTTCTTTAGTAGAATGGGAAAACGAAATCAGGAAATCTAAGAGCCTATTGCTACTAATTCTAGCAACACAATCCTTGGAAGCTCGTTGGTTGCCGTGTCAGCTAAATGGATCATGTTCACTTATAGAAACAATAAGAGAACAAGATGATGGCACAATATGGGCGGTTCTTGTTGCTGGATCAAATGG...
Protein
Download Protein FASTA509 aa · LXL04_026556|LXL04_026556|OH1004|PROTEIN
MTILIWNQPHGHFQGHLLLLPSTTISLVEWENEIRKSKSLLLLILATQSLEARWLPCQLNGSCSLIETIREQDDGTIWAVLVAGSNGYYNYRHQADVCHAYQILKGRGLMDENIIVFMYDDIAHHESNPKPGVIINNPKGEDVYAGVPKDYTGDSLTAANLYAVILGDKKSVTGGSGKVLDSKSNDRVFIYYTDHGGPGTLGMPDSPNVYAKDFIDVLEKKHASRTYKEMVIYVESCESGSIFEGLLSENLNIYVTTASK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026556 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026556 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:128198617-128207067 (+) | ||||||||||||
| Description | Similar to Vacuolar-processing enzyme | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006624 vacuolar protein processing Biological Process GO:0051603 proteolysis involved in protein catabolic process Biological Process GO:0000326 protein storage vacuole Cellular Component GO:0005773 vacuole Cellular Component GO:0004175 endopeptidase activity Molecular Function GO:0004197 cysteine-type endopeptidase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G62710 dosa:Os02g0644000 gmx:547964 osa:4330133 rcu:8272115 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01650.24Peptidase_C1378-347 aaPF20985.3Legum_prodom396-492 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026556 | PF01650.24 | Peptidase_C13 | 78 | 347 | 2.2e-113 | 378.8 |
| LXL04_026556 | PF20985.3 | Legum_prodom | 396 | 492 | 2e-38 | 131.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.