LXL04_026271 | RubberDandelionOmics

Gene overview

LXL04_026271

Reference: OH-1004 Chr: Chr05 Coordinates: 124177238-124178385 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

888 bp · LXL04_026271|LXL04_026271|OH1004|cDNA

ATGATGAGTGAAGTAGATAGCTTTCCAACAATTACAGGTCTCGAAGATAACAACCCCTCCAAAACTTCCGTCACAGGAAGAGTTCGACGGTCGAGATTACTCACCACTGTGGCATGGAAGCTGTTCGTGCTCCCGGTTTCTATAGTCGGCGGAGGCGTAGGGTTAGTTACCGGCTCAATTGGGCTGAGCTTTTGGGTGGCTGGTCGTGTTCTCTCCTATTGGCTAAGCATGTTCAGGTTAACTAGGTCTGAGCGCGGCCA...

CDS

Download CDS FASTA

888 bp · LXL04_026271|LXL04_026271|OH1004|CDS

ATGATGAGTGAAGTAGATAGCTTTCCAACAATTACAGGTCTCGAAGATAACAACCCCTCCAAAACTTCCGTCACAGGAAGAGTTCGACGGTCGAGATTACTCACCACTGTGGCATGGAAGCTGTTCGTGCTCCCGGTTTCTATAGTCGGCGGAGGCGTAGGGTTAGTTACCGGCTCAATTGGGCTGAGCTTTTGGGTGGCTGGTCGTGTTCTCTCCTATTGGCTAAGCATGTTCAGGTTAACTAGGTCTGAGCGCGGCCA...

Protein

Download Protein FASTA

295 aa · LXL04_026271|LXL04_026271|OH1004|PROTEIN

MMSEVDSFPTITGLEDNNPSKTSVTGRVRRSRLLTTVAWKLFVLPVSIVGGGVGLVTGSIGLSFWVAGRVLSYWLSMFRLTRSERGQKPSLTLPVSASVSTAAETIDLSAFERASSPEEMDTELQSTVLEENDPALIAPSVDIINEHTNNPQLMEEQDIPIGAATEIDQGNNCRSEVDQNPIETEPEPEDEDEPEQEPKPEAEDEAEPETEPEPDVIEVFVRLPTGDKIERRFSCTETLQSIYEFVDSSGVLDVGSYTLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026271`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026271

Location Chr05:124177238-124178385 (-)

Description Similar to PUX10: Plant UBX domain-containing protein 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10790`	Plant UBX domain-containing protein 10.	No verified direct reference in this release
`At4g23040`	Plant UBX domain-containing protein 13.	No verified direct reference in this release
`At4g00752`	Plant UBX domain-containing protein 9.	No verified direct reference in this release
`At4g11740`	Plant UBX domain-containing protein 8.	No verified direct reference in this release
`At2g43210`	Plant UBX domain-containing protein 11.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026271 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016192 vesicle-mediated transport Biological Process

GO:0036503 ERAD pathway Biological Process

GO:1905691 lipid droplet disassembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0030674 protein-macromolecule adaptor activity Molecular Function

GO:0043130 ubiquitin binding Molecular Function

KEGG gene cross-reference

ath:AT4G00752

ath:AT4G10790

ath:AT4G11740

ath:AT4G23040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.345

Rank 1 · LXL04_026271 · OH-1004

Cytoplasm0.288

Rank 2 · LXL04_026271 · OH-1004

Nucleus0.225

Rank 3 · LXL04_026271 · OH-1004

Golgi apparatus0.206

Rank 4 · LXL04_026271 · OH-1004

Cell membrane0.160

Rank 5 · LXL04_026271 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00789.27UBX212-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026271	`PF00789.27`	UBX	212	292	3.2e-18	66.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M0N1`	Arabidopsis thaliana	Plant UBX domain-containing protein 10	33.473%	Swiss-Prot	moderate database homology
`Q9C5G7`	Arabidopsis thaliana	Plant UBX domain-containing protein 13	40.741%	Swiss-Prot	weak database homology
`Q4V3D3`	Arabidopsis thaliana	Plant UBX domain-containing protein 9	31.915%	Swiss-Prot	weak database homology
`F4JPR7`	Arabidopsis thaliana	Plant UBX domain-containing protein 8	36.782%	Swiss-Prot	weak database homology
`Q9ZW74`	Arabidopsis thaliana	Plant UBX domain-containing protein 11	30.667%	Swiss-Prot	weak database homology

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