LXL04_026130 | RubberDandelionOmics

Gene overview

LXL04_026130

Reference: OH-1004 Chr: Chr05 Coordinates: 121354864-121363674 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3765 bp · LXL04_026130|LXL04_026130|OH1004|cDNA

ATGAGCAACCCCACATCACTCTCTGTCGACGGCGGCGGCGTTGACACGACAGATGGCAAGGAACATCAAACCATAAAACCCAAAACCGTTCCAATGCTAAAACTGTTTGCATTTGCCGATTCCTATGATTACTTTCTTATGTTTTTTGGGTCCCTCGGAGCATGCATTCACGGGGCATCGGTGCCggttttcttcatctttttcggCAAGCTGATCAACATCATCGGACTTGCTTATCTTTTTCCCAAAGAAGCTTCTCA...

CDS

Download CDS FASTA

3765 bp · LXL04_026130|LXL04_026130|OH1004|CDS

ATGAGCAACCCCACATCACTCTCTGTCGACGGCGGCGGCGTTGACACGACAGATGGCAAGGAACATCAAACCATAAAACCCAAAACCGTTCCAATGCTAAAACTGTTTGCATTTGCCGATTCCTATGATTACTTTCTTATGTTTTTTGGGTCCCTCGGAGCATGCATTCACGGGGCATCGGTGCCGGTTTTCTTCATCTTTTTCGGCAAGCTGATCAACATCATCGGACTTGCTTATCTTTTTCCCAAAGAAGCTTCTCA...

Protein

Download Protein FASTA

1254 aa · LXL04_026130|LXL04_026130|OH1004|PROTEIN

MSNPTSLSVDGGGVDTTDGKEHQTIKPKTVPMLKLFAFADSYDYFLMFFGSLGACIHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAKYSLDFVYLSVVILFSSWTEVACWMHSGERQAAKMRMAYLKSMLSQDISLFDTETSTGEVISAITSDIIVVQDAISEKVGNFMHYISRFLSGFIIGFVRVWQISLVTLSIVPAIAIAGGVYAYVATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFSGEEKAVNSYIDAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026130`
TK1151 ID	TkA06G026740
OH-1004 ID	LXL04_026130
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026130

Location Chr05:121354864-121363674 (-)

Description Similar to ABCB2: ABC transporter B family member 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25960`	ABC transporter B family member 2.	No verified direct reference in this release
`At1g10680`	ABC transporter B family member 10.	No verified direct reference in this release
`At3g28860`	May participate in brassinosteroid export and related signaling.	TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19.2003 · DOI: 10.1091/mbc.e02-10-0698 Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.2019 · DOI: 10.1371/journal.pgen.1008023 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223 Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185 Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260 Structure and function of the <i>Arabidopsis</i> ABC transporter ABCB19 in brassinosteroid export.2024 · DOI: 10.1126/science.adj4591 ABCB19 transporter: fostering brassinosteroid transport through membrane flexibility.2024 · DOI: 10.1016/j.tplants.2024.06.005 Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.2025 · DOI: 10.1016/j.xplc.2024.101181 Quantitative analysis of the root posture of Arabidopsis thaliana mutants with wavy roots.2024 · DOI: 10.1017/qpb.2024.12
`At1g27940`	ABC transporter B family member 13.	No verified direct reference in this release
`At1g28010`	ABC transporter B family member 14.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026130 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0009555 pollen development Biological Process

GO:0009637 response to blue light Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0010218 response to far red light Biological Process

KEGG gene cross-reference

ath:AT1G10680

ath:AT1G27940

ath:AT1G28010

ath:AT3G28860

ath:AT4G25960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.611

Rank 1 · LXL04_026130 · OH-1004

Lysosome / Vacuole0.172

Rank 2 · LXL04_026130 · OH-1004

Cytoplasm0.105

Rank 3 · LXL04_026130 · OH-1004

Endoplasmic reticulum0.104

Rank 4 · LXL04_026130 · OH-1004

Golgi apparatus0.047

Rank 5 · LXL04_026130 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664.29ABC_membrane48-319 aa

PF00005.34ABC_tran390-538 aa

PF02463.26SMC_N430-581 aa

PF00664.29ABC_membrane690-959 aa

PF00005.34ABC_tran1026-1174 aa

PF02463.26SMC_N1062-1217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026130	`PF00664.29`	ABC_membrane	48	319	5.2e-92	309.1
LXL04_026130	`PF00005.34`	ABC_tran	390	538	1.4e-70	236.9
LXL04_026130	`PF02463.26`	SMC_N	430	581	1.6e-16	61.2
LXL04_026130	`PF00664.29`	ABC_membrane	690	959	5.2e-92	309.1
LXL04_026130	`PF00005.34`	ABC_tran	1026	1174	1.4e-70	236.9
LXL04_026130	`PF02463.26`	SMC_N	1062	1217	1.6e-16	61.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPK2`	Arabidopsis thaliana	ABC transporter B family member 2	78.704%	Swiss-Prot	strong database homology
`Q9SGY1`	Arabidopsis thaliana	ABC transporter B family member 10	77.932%	Swiss-Prot	strong database homology
`Q9LJX0`	Arabidopsis thaliana	ABC transporter B family member 19	51.997%	Swiss-Prot	strong database homology
`Q9C7F8`	Arabidopsis thaliana	ABC transporter B family member 13	50.810%	Swiss-Prot	strong database homology
`Q9C7F2`	Arabidopsis thaliana	ABC transporter B family member 14	50.856%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card