LXL04_025114 | RubberDandelionOmics

Gene overview

LXL04_025114

Reference: OH-1004 Chr: Chr05 Coordinates: 106272330-106280915 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1620 bp · LXL04_025114|LXL04_025114|OH1004|cDNA

ATGGCTAGCTACTTGCCTAGACCTAATAAACCGAGAATCAAAACCATATATCAAAGAAGCAAATCAGAACTCCGAAATTTAAACTTAGAACTCGAAAATCAGAAGCAAGAAATCAGAAATCAGATAATGACTGTAACTTGGACAAGTGGATATGGAATCAATGAAGCCGAACCTTTCGTGGAATGGGGCCGAATAGGCGAGGAGACTCGGCGATCTCCAGCTGGCACACTCATAATTGATCGAAATACCCTTTGTGGAGC...

CDS

Download CDS FASTA

1620 bp · LXL04_025114|LXL04_025114|OH1004|CDS

ATGGCTAGCTACTTGCCTAGACCTAATAAACCGAGAATCAAAACCATATATCAAAGAAGCAAATCAGAACTCCGAAATTTAAACTTAGAACTCGAAAATCAGAAGCAAGAAATCAGAAATCAGATAATGACTGTAACTTGGACAAGTGGATATGGAATCAATGAAGCCGAACCTTTCGTGGAATGGGGCCGAATAGGCGAGGAGACTCGGCGATCTCCAGCTGGCACACTCATAATTGATCGAAATACCCTTTGTGGAGC...

Protein

Download Protein FASTA

539 aa · LXL04_025114|LXL04_025114|OH1004|PROTEIN

MASYLPRPNKPRIKTIYQRSKSELRNLNLELENQKQEIRNQIMTVTWTSGYGINEAEPFVEWGRIGEETRRSPAGTLIIDRNTLCGAPARTVGWRDPGFIHTGFLHELWSISVYTYKLGHKLLNDTFVYSPVYQFKSCPYPGQDSLQRVIIFGDMGKPAFRTPWPSTSLFRLIEPPALRGSVSVSHIGANTIYKWLYMLEYPLSPQGLFWRDNIGAPHTLTRRTDGSNDYNNYQHGSLNTTKQLIKDLNNYGIVFHVGDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025114`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025114

Location Chr05:106272330-106280915 (-)

Description Similar to PAP1: Probable inactive purple acid phosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13750`	Probable inactive purple acid phosphatase 1.	No verified direct reference in this release
`At5g50400`	Probable inactive purple acid phosphatase 27.	No verified direct reference in this release
`At4g24890`	Probable inactive purple acid phosphatase 24.	No verified direct reference in this release
`At2g03450`	Probable inactive purple acid phosphatase 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025114 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G13750

ath:AT4G24890

ath:AT5G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.330

Rank 1 · LXL04_025114 · OH-1004

Lysosome / Vacuole0.319

Rank 2 · LXL04_025114 · OH-1004

Cytoplasm0.149

Rank 3 · LXL04_025114 · OH-1004

Cell membrane0.110

Rank 4 · LXL04_025114 · OH-1004

Endoplasmic reticulum0.099

Rank 5 · LXL04_025114 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16656.12Pur_ac_phosph_N43-136 aa

PF00149.34Metallophos235-415 aa

PF14008.12Metallophos_C440-499 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025114	`PF16656.12`	Pur_ac_phosph_N	43	136	4.3e-06	27.9
LXL04_025114	`PF00149.34`	Metallophos	235	415	6e-14	53.7
LXL04_025114	`PF14008.12`	Metallophos_C	440	499	5.3e-15	56.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LMX4`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 1	72.549%	Swiss-Prot	moderate database homology
`Q5MAU8`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 27	69.079%	Swiss-Prot	moderate database homology
`Q8H1R2`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 24	67.763%	Swiss-Prot	moderate database homology
`Q9ZQ81`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 9	32.797%	Swiss-Prot	weak database homology

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