LXL04_024265 | RubberDandelionOmics

Gene overview

LXL04_024265

Reference: OH-1004 Chr: Chr05 Coordinates: 86213796-86214718 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

588 bp · LXL04_024265|LXL04_024265|OH1004|cDNA

ATGAAGCTTCTCCGGGAGCGAAGAAGATTCAAAAGCAGAGTTACAGTCTCTCACATTGCGATCCGTTTTCTACTTGTATATACTGATCGGAATATAAGTAGGGGAGACAACATGGACGAAGAATTGCCAGGTTCAATTGGTACAAGCGCAAGCTTAGCCCTAAGATTGGGACAGGCGCTCTTCTCTGTTGCTTCTCTCCTTTTCATGTGCGTCGGTGTTCAGTTCTACGCTTATACTTCTTTCTGCTTCCTGGTAACAAT...

CDS

Download CDS FASTA

588 bp · LXL04_024265|LXL04_024265|OH1004|CDS

ATGAAGCTTCTCCGGGAGCGAAGAAGATTCAAAAGCAGAGTTACAGTCTCTCACATTGCGATCCGTTTTCTACTTGTATATACTGATCGGAATATAAGTAGGGGAGACAACATGGACGAAGAATTGCCAGGTTCAATTGGTACAAGCGCAAGCTTAGCCCTAAGATTGGGACAGGCGCTCTTCTCTGTTGCTTCTCTCCTTTTCATGTGCGTCGGTGTTCAGTTCTACGCTTATACTTCTTTCTGCTTCCTGGTAACAAT...

Protein

Download Protein FASTA

195 aa · LXL04_024265|LXL04_024265|OH1004|PROTEIN

MKLLRERRRFKSRVTVSHIAIRFLLVYTDRNISRGDNMDEELPGSIGTSASLALRLGQALFSVASLLFMCVGVQFYAYTSFCFLVTIQGLMIPWSLTLAMVDTFYVFVKPPSRQVQMVAVIVIGDWILSFLSLAAACSTASVSDFMVTEAGASFCGGKICSRYQSSAAMACLSWCLSLASGLFNFWLLPSLCSNF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024265`
TK1151 ID	TkA06G157770
OH-1004 ID	LXL04_024265
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 81.026 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024265

Location Chr05:86213796-86214718 (-)

Description Similar to ARALYDRAFT_485429: CASP-like protein ARALYDRAFT_485429

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50810`	CASP-like protein 5C2.	No verified direct reference in this release
`At4g37235`	CASP-like protein 5C1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0767900`	CASP-like protein 5C1.	No verified direct reference in this release
`UniProt: B8BPI2`	CASP-like protein 5C1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024265 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G50810

ath:AT4G37235

dosa:Os03g0767900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.660

Rank 1 · LXL04_024265 · OH-1004

Endoplasmic reticulum0.136

Rank 2 · LXL04_024265 · OH-1004

Lysosome / Vacuole0.127

Rank 3 · LXL04_024265 · OH-1004

Cytoplasm0.111

Rank 4 · LXL04_024265 · OH-1004

Nucleus0.064

Rank 5 · LXL04_024265 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04535.18CASP_dom47-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024265	`PF04535.18`	CASP_dom	47	176	3.5e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0CB17`	Arabidopsis thaliana	CASP-like protein 5C2	49.342%	Swiss-Prot	moderate database homology
`Q66GI1`	Arabidopsis thaliana	CASP-like protein 5C1	54.248%	Swiss-Prot	strong database homology
`Q10EJ2`	Oryza sativa subsp. japonica	CASP-like protein 5C1	53.548%	Swiss-Prot	strong database homology
`B8BPI2`	Oryza sativa subsp. indica	CASP-like protein 5C1	52.903%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card