LXL04_022679 | RubberDandelionOmics

Gene overview

LXL04_022679

Reference: OH-1004 Chr: Chr05 Coordinates: 4719804-4720916 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_022679|LXL04_022679|OH1004|cDNA

atgaacGACGCAGCCGGTATCTTGGAGTTGCCGGAAGGCTGTCTGTCGGAGGTACTATCACTAACTTCACCTAGGGATGCGTGCAGAGCTGCCTCCATCACTAAAGGGTTCACTTCCGCCGCAGATTCCGACGCCGTTTGGGAGCGGTTTCTGCCACCGGATTACCGTGAAGTGATTGCGAGGTCGGTTTCTCTTTCTCCGCTGGTTTTTGACACCAAAAAGCAACTCTACCTCTTCTTATCTGATTCCCATATCCTCCT...

CDS

Download CDS FASTA

816 bp · LXL04_022679|LXL04_022679|OH1004|CDS

ATGAACGACGCAGCCGGTATCTTGGAGTTGCCGGAAGGCTGTCTGTCGGAGGTACTATCACTAACTTCACCTAGGGATGCGTGCAGAGCTGCCTCCATCACTAAAGGGTTCACTTCCGCCGCAGATTCCGACGCCGTTTGGGAGCGGTTTCTGCCACCGGATTACCGTGAAGTGATTGCGAGGTCGGTTTCTCTTTCTCCGCTGGTTTTTGACACCAAAAAGCAACTCTACCTCTTCTTATCTGATTCCCATATCCTCCT...

Protein

Download Protein FASTA

271 aa · LXL04_022679|LXL04_022679|OH1004|PROTEIN

MNDAAGILELPEGCLSEVLSLTSPRDACRAASITKGFTSAADSDAVWERFLPPDYREVIARSVSLSPLVFDTKKQLYLFLSDSHILLDHGHLSFHVDKESGKKCYMLGAKELSIAWQDDSRYWEWRNIPESRFLEVCILRKVWWLEIQGRIPAMVLSPKSTYMAYLVFRTTGESRGLAVPGKTKISFHGIEMETENVYLQRPAGAANVITTMHREDDVFPRRRKDGWMEIKLGEFECDELESDNGEIVMAFDEHRSWKCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022679`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022679

Location Chr05:4719804-4720916 (-)

Description Similar to At2g02240: F-box protein At2g02240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02240`	F-box protein At2g02240.	No verified direct reference in this release
`At2g02360`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At2g02250`	Putative F-box protein PP2-B2.	No verified direct reference in this release
`At2g02230`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g09155`	F-box protein PP2-B15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022679 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G09155

ath:AT2G02230

ath:AT2G02240

ath:AT2G02250

ath:AT2G02360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.583

Rank 1 · LXL04_022679 · OH-1004

Cytoplasm0.472

Rank 2 · LXL04_022679 · OH-1004

Cell membrane0.078

Rank 3 · LXL04_022679 · OH-1004

Endoplasmic reticulum0.070

Rank 4 · LXL04_022679 · OH-1004

Plastid0.029

Rank 5 · LXL04_022679 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14299.14PP2102-270 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022679	`PF14299.14`	PP2	102	270	6.4e-46	156.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q3E6P4`	Arabidopsis thaliana	F-box protein At2g02240	43.985%	Swiss-Prot	moderate database homology
`Q9ZVQ6`	Arabidopsis thaliana	F-box protein PP2-B10	43.071%	Swiss-Prot	moderate database homology
`Q9ZVR5`	Arabidopsis thaliana	Putative F-box protein PP2-B2	41.045%	Swiss-Prot	moderate database homology
`Q6NPT8`	Arabidopsis thaliana	F-box protein PP2-B1	37.829%	Swiss-Prot	moderate database homology
`O80494`	Arabidopsis thaliana	F-box protein PP2-B15	40.493%	Swiss-Prot	moderate database homology

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