LXL04_021629 | RubberDandelionOmics

Gene overview

LXL04_021629

Reference: OH-1004 Chr: Chr04 Coordinates: 133931283-133933374 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_021629|LXL04_021629|OH1004|cDNA

ATGGCAGGTCCGTTGGATAGGTACCATAAATTAGGGCTTCAACAATCCTTCTCCCGAACCTATCATTATCCTTCAGCTTGCAAAGAACTTGCGATAATTCTCAAACTCTCCTATTCTAAATTCCCCAAAAGCTTGCAATCGCTTGTTTTCCAGGACGTCGTCACCGCCTTTGGCCTTCTTCCTCGAATGCAAACACCAACCGCCATTCATGCCGCCAATACACTCCTTCAAGCTGTAGAATCAGCATTACCCAAACAAAA...

CDS

Download CDS FASTA

876 bp · LXL04_021629|LXL04_021629|OH1004|CDS

ATGGCAGGTCCGTTGGATAGGTACCATAAATTAGGGCTTCAACAATCCTTCTCCCGAACCTATCATTATCCTTCAGCTTGCAAAGAACTTGCGATAATTCTCAAACTCTCCTATTCTAAATTCCCCAAAAGCTTGCAATCGCTTGTTTTCCAGGACGTCGTCACCGCCTTTGGCCTTCTTCCTCGAATGCAAACACCAACCGCCATTCATGCCGCCAATACACTCCTTCAAGCTGTAGAATCAGCATTACCCAAACAAAA...

Protein

Download Protein FASTA

291 aa · LXL04_021629|LXL04_021629|OH1004|PROTEIN

MAGPLDRYHKLGLQQSFSRTYHYPSACKELAIILKLSYSKFPKSLQSLVFQDVVTAFGLLPRMQTPTAIHAANTLLQAVESALPKQKKAMAVTEFKHAMVTHKRHSKSQQNKEDLVELPQDVLVHVFSFLDLQSLLSSSQVCRSWNIASSDTHLWQTLYTNTTHIFHNINNPIYHKLTNNIFSQKSNIHWKNIYIEMYNGFSWKKLLTSSRGICKHCHEIVWVSDMTNDKTFELKCKYHHILPISTRQIVEYIGGGYVLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021629`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021629

Location Chr04:133931283-133933374 (-)

Description Similar to At5g52880: F-box protein At5g52880

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52880`	F-box protein At5g52880.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021629 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0035882 defecation rhythm Biological Process

GO:2000746 regulation of defecation rhythm Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005929 cilium Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT5G52880

cel:CELE_C02F5.7

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.623

Rank 1 · LXL04_021629 · OH-1004

Cytoplasm0.340

Rank 2 · LXL04_021629 · OH-1004

Cell membrane0.065

Rank 3 · LXL04_021629 · OH-1004

Mitochondrion0.058

Rank 4 · LXL04_021629 · OH-1004

Endoplasmic reticulum0.040

Rank 5 · LXL04_021629 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24104.2At5g52880_ARM6-104 aa

PF12937.13F-box-like117-160 aa

PF00646.39F-box117-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021629	`PF24104.2`	At5g52880_ARM	6	104	3.3e-41	140.5
LXL04_021629	`PF12937.13`	F-box-like	117	160	3.4e-16	59.5
LXL04_021629	`PF00646.39`	F-box	117	156	6.5e-10	39.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLX3`	Arabidopsis thaliana	F-box protein At5g52880	39.921%	Swiss-Prot	moderate database homology

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