LXL04_020940 | RubberDandelionOmics

Gene overview

LXL04_020940

Reference: OH-1004 Chr: Chr04 Coordinates: 115901532-115905909 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · LXL04_020940|LXL04_020940|OH1004|cDNA

ATGCCATTTGGGTTGGTTTCTGCTTGGAATAAGAGAAGGAGAAGCAAGTCAGATGATCATCTTGATCCATGGGTTTATAGGCCCGTGGAGTATTGGAAACTTGAAAATGATCAAAATATTCGAAACCCACCTCCGAAAAGGCGCCATGGATCTGCGGTTTTTACATTGAAGGAAATGGAAGAGGCGACTTGTTCTTTCAGTGAAGAAAATCTGGTGGGAAAAGGAGGATTTGGAAAAGTTTACAAGGGAAAGTTGCAGTC...

CDS

Download CDS FASTA

1095 bp · LXL04_020940|LXL04_020940|OH1004|CDS

ATGCCATTTGGGTTGGTTTCTGCTTGGAATAAGAGAAGGAGAAGCAAGTCAGATGATCATCTTGATCCATGGGTTTATAGGCCCGTGGAGTATTGGAAACTTGAAAATGATCAAAATATTCGAAACCCACCTCCGAAAAGGCGCCATGGATCTGCGGTTTTTACATTGAAGGAAATGGAAGAGGCGACTTGTTCTTTCAGTGAAGAAAATCTGGTGGGAAAAGGAGGATTTGGAAAAGTTTACAAGGGAAAGTTGCAGTC...

Protein

Download Protein FASTA

364 aa · LXL04_020940|LXL04_020940|OH1004|PROTEIN

MPFGLVSAWNKRRRSKSDDHLDPWVYRPVEYWKLENDQNIRNPPPKRRHGSAVFTLKEMEEATCSFSEENLVGKGGFGKVYKGKLQSGEVVAIKKMELPPFKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMRKGNLQDHLNGIGEKKLDWGVRLKVAIGAARGLAYLHSSCAVGIPVVHRDFKSTNILLSDDYEAKISDFGLAKLMPEGQETNVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020940`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020940

Location Chr04:115901532-115905909 (+)

Description Similar to PBL28: Probable serine/threonine-protein kinase PBL28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24030`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g20650`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g18610`	May act as a receptor-like cytoplasmic kinase in chitin-induced immune signaling.	Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.2014 · DOI: 10.1111/tpj.12535 The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.2016 · DOI: 10.15252/embj.201694248
`At5g02800`	Serine/threonine-protein kinase involved in the positive regulation of brassinosteroid (BR) signaling and plant growth.	No verified direct reference in this release
`At3g20530`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020940 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0043410 positive regulation of MAPK cascade Biological Process

GO:0045087 innate immune response Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071323 cellular response to chitin Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:1900459 positive regulation of brassinosteroid mediated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G20650

ath:AT1G24030

ath:AT3G20530

ath:AT5G02800

ath:AT5G18610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.697

Rank 1 · LXL04_020940 · OH-1004

Cytoplasm0.245

Rank 2 · LXL04_020940 · OH-1004

Nucleus0.222

Rank 3 · LXL04_020940 · OH-1004

Endoplasmic reticulum0.040

Rank 4 · LXL04_020940 · OH-1004

Golgi apparatus0.029

Rank 5 · LXL04_020940 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase67-342 aa

PF07714.24PK_Tyr_Ser-Thr70-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020940	`PF00069.32`	Pkinase	67	342	1.4e-49	169.6
LXL04_020940	`PF07714.24`	PK_Tyr_Ser-Thr	70	343	1.5e-45	156.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84M95`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL28	72.032%	Swiss-Prot	strong database homology
`Q9LDZ5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL21	48.829%	Swiss-Prot	moderate database homology
`Q1PDV6`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL27	47.869%	Swiss-Prot	moderate database homology
`Q0WRY5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL7	49.164%	Swiss-Prot	moderate database homology
`F4JEQ2`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL23	46.129%	Swiss-Prot	moderate database homology

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