Gene Card
Gene overview
cDNA / CDS / Protein Sequences
843 bp · LXL04_020920|LXL04_020920|OH1004|cDNA
ATGTTGGATTTCAATGAAGAAGCAAGATCTCCTTTTGTAAAGAAGTTTAAAACCATAATTCATCCTGGAGAGGTCAGTCGCATCAGGGAGCTTCCTCAAAACAGCAAAATTGTAGCCACACACACAGACAGTCCTGATGTTCTTATTTGGGATGTTGAAGCTCAGCCCAATCGCCATGCTGTCCTGGGAGCCACAGAGTCCCGTCCTGATCTGATCTTGACCGGTCTTCAAGAAAAAGCAGAATTTGCTCTTGCTATGTG...
843 bp · LXL04_020920|LXL04_020920|OH1004|CDS
ATGTTGGATTTCAATGAAGAAGCAAGATCTCCTTTTGTAAAGAAGTTTAAAACCATAATTCATCCTGGAGAGGTCAGTCGCATCAGGGAGCTTCCTCAAAACAGCAAAATTGTAGCCACACACACAGACAGTCCTGATGTTCTTATTTGGGATGTTGAAGCTCAGCCCAATCGCCATGCTGTCCTGGGAGCCACAGAGTCCCGTCCTGATCTGATCTTGACCGGTCTTCAAGAAAAAGCAGAATTTGCTCTTGCTATGTG...
Protein
Download Protein FASTA280 aa · LXL04_020920|LXL04_020920|OH1004|PROTEIN
MLDFNEEARSPFVKKFKTIIHPGEVSRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATESRPDLILTGLQEKAEFALAMCQSEPFVLSGGKGKSVVLWSIHDHISSLATESPGSNGPKTENKVTDSPKIQAMGSIKAIQILLKMYSFAPLVRKSFVVLVMTRVLFYGMREPDLLQLLRTEGKFVKKIKCLVGERFGLASKLAPGLLFRHSGHRYIFNFNQQFSRNKKLIYYMALLKVNDMTYTLNMKSKHHEL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_020920 |
|---|---|
| TK1151 ID | TkA07G100250 |
| OH-1004 ID | LXL04_020920 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 93.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 35.714Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_020920 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:114987024-114989409 (+) | |||||||||
| Description | Similar to MSI4: WD-40 repeat-containing protein MSI4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006325 chromatin organization Biological Process GO:0006335 DNA replication-dependent chromatin assembly Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0007307 eggshell chorion gene amplification Biological Process GO:0007346 regulation of mitotic cell cycle Biological Process GO:0007379 segment specification Biological Process GO:0009627 systemic acquired resistance Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G19520 ath:AT4G29730 dme:Dmel_CG4236 gga:395390 xla:108708306 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.