LXL04_019688 | RubberDandelionOmics

Gene overview

LXL04_019688

Reference: OH-1004 Chr: Chr04 Coordinates: 36948508-36952040 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1176 bp · LXL04_019688|LXL04_019688|OH1004|cDNA

GCGTCAAGTGCGAGCGTCAAAAAGGCATTTAGAGTCCAACAAATCACCATCATTAAACTCATCGCCTCACGGCCACCTTACGCTAGCCACAGCAAGCACAATATCCCTAGCACCTCCACTTCTCAACAACCACCGCCATTTTCATCGCCTCCAAGCTCCGAATTAGGGTTTACTGCATCCAAAGCAATGGCGATGGTTTCAACTTCTCTTACACCTGCATCCCAGCTCTCCGGTTCCAAATCCGCCGCTGCTTCTCCGGC...

CDS

Download CDS FASTA

990 bp · LXL04_019688|LXL04_019688|OH1004|CDS

ATGGCGATGGTTTCAACTTCTCTTACACCTGCATCCCAGCTCTCCGGTTCCAAATCCGCCGCTGCTTCTCCGGCTCTTTTCTCCGGACTCCGCCGCTCATCGAAACTCGACTCTGTTTCACCCTCCACAACTCAGTCGTTCTTCCAATCTGTCAATTCTCACATCCGTTTCTCTTCTACTTCTACACGACCTTGCAGCGGCATCGTCGCCATGGCCGGCACCGGAAAGTTCTTTGTCGGAGGCAACTGGAAGTGTAATGG...

Protein

Download Protein FASTA

329 aa · LXL04_019688|LXL04_019688|OH1004|PROTEIN

MAMVSTSLTPASQLSGSKSAAASPALFSGLRRSSKLDSVSPSTTQSFFQSVNSHIRFSSTSTRPCSGIVAMAGTGKFFVGGNWKCNGTKDSIKQLVSDLNSATLEADVDVVVGPPFVYIDQVKNTLSDRIEIAAQNSWIGKGGAFTGEISAEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALGQNLGVIACIGELLEEREAGKTFDVCFKQLKAYADAVSSWDNIVIAYEPVWAIGTGKVASPEQAQEVHVAVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019688`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019688

Location Chr04:36948508-36952040 (+)

Description Similar to TPIP1: Triosephosphate isomerase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21170`	Triosephosphate isomerase, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019688 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0006642 triglyceride mobilization Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0019253 reductive pentose-phosphate cycle Biological Process

GO:0019563 glycerol catabolic process Biological Process

GO:0046166 glyceraldehyde-3-phosphate biosynthetic process Biological Process

GO:0080022 primary root development Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT2G21170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983

Rank 1 · LXL04_019688 · OH-1004

Mitochondrion0.037

Rank 2 · LXL04_019688 · OH-1004

Cytoplasm0.032

Rank 3 · LXL04_019688 · OH-1004

Peroxisome0.025

Rank 4 · LXL04_019688 · OH-1004

Nucleus0.016

Rank 5 · LXL04_019688 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00121.25TIM78-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019688	`PF00121.25`	TIM	78	318	3.5e-92	309.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SKP6`	Arabidopsis thaliana	Triosephosphate isomerase, chloroplastic	76.220%	Swiss-Prot	strong database homology

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