Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3489 bp · LXL04_019637|LXL04_019637|OH1004|cDNA
ATGACAAACACCGGTCTAGAATCGTTGGTGGACAACTTGAAGCATCTAATATACAGCGACAACAACCCATTGATCTACGAGAATCCATTTCTTCAGGACAAAATGTCGCATATGGAGTTTTTGTATCATGAACTTCAGTCCCTAAGAACCTTTCTTATTGATATGGAGGTCCCAAATCAACCCGCAAAGCTCGAAAAAATGAGAAACTTGAAGAAAAGTCTTAGAGATGTGGTAGATGAAGCTGAGGATGTTCTTGATCT...
3489 bp · LXL04_019637|LXL04_019637|OH1004|CDS
ATGACAAACACCGGTCTAGAATCGTTGGTGGACAACTTGAAGCATCTAATATACAGCGACAACAACCCATTGATCTACGAGAATCCATTTCTTCAGGACAAAATGTCGCATATGGAGTTTTTGTATCATGAACTTCAGTCCCTAAGAACCTTTCTTATTGATATGGAGGTCCCAAATCAACCCGCAAAGCTCGAAAAAATGAGAAACTTGAAGAAAAGTCTTAGAGATGTGGTAGATGAAGCTGAGGATGTTCTTGATCT...
Protein
Download Protein FASTA1162 aa · LXL04_019637|LXL04_019637|OH1004|PROTEIN
MTNTGLESLVDNLKHLIYSDNNPLIYENPFLQDKMSHMEFLYHELQSLRTFLIDMEVPNQPAKLEKMRNLKKSLRDVVDEAEDVLDLFLTSSFIRNNNSMTMSCDAENINRSPNFNHLMQEIKSIKKEIMDTKMKPPSVPTRNISRAIIKEEIVVGLEDDSMVLLDRLTRNQKQLDVISIVGMGGLGKTTLATKVFNDPFIVYHFHVRAWVTVSQAYDNKDLLISILTSIGKIAPEEIDKLKDHKISELLYKSLKDRRYL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019637 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019637 |
|---|---|
| Location | Chr04:35741866-35749903 (-) |
| Description | Similar to R1A-6: Putative late blight resistance protein homolog R1A-6 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009626 plant-type hypersensitive response Biological Process GO:0051607 defense response to virus Biological Process GO:0005737 cytoplasm Cellular Component GO:0016020 membrane Cellular Component GO:0005524 ATP binding Molecular Function GO:0043531 ADP binding Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF18052.7Rx_N29-96 aaPF00931.29NB-ARC164-332 aaPF23559.2WHD_DRP416-485 aaPF23598.2LRR_14558-838 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_019637 | PF18052.7 | Rx_N | 29 | 96 | 6.5e-08 | 33.3 |
| LXL04_019637 | PF00931.29 | NB-ARC | 164 | 332 | 2.6e-44 | 151.5 |
| LXL04_019637 | PF23559.2 | WHD_DRP | 416 | 485 | 7.1e-22 | 77.9 |
| LXL04_019637 | PF23598.2 | LRR_14 | 558 | 838 | 6.6e-19 | 68.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.