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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019576
Reference: OH-1004 Chr: Chr04 Coordinates: 34371081-34374232 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2733 bp · LXL04_019576|LXL04_019576|OH1004|cDNA

ATGAGAGAGTTAACCAAAGCTCTCATCAACAACACCAACAATCCTGAATTAGCTTGGCAGATCTTCAAACGCATCGCCTCCAATCCCAGCTTCCCACCCGATGCTTTCAACGAATCACTATCTGTTCTTACCCGTATCCTGATTGGTGCTAAAAAGTTCACCCAAATCAATGCGCTTCAGCAACTCATCCTATCGTACCCATCCAAGACATCACACGACTCCATGGTCTTCCTCGTCCGAGTTCTTGCCAAATCCGGTCA...

CDS

Download CDS FASTA

2733 bp · LXL04_019576|LXL04_019576|OH1004|CDS

ATGAGAGAGTTAACCAAAGCTCTCATCAACAACACCAACAATCCTGAATTAGCTTGGCAGATCTTCAAACGCATCGCCTCCAATCCCAGCTTCCCACCCGATGCTTTCAACGAATCACTATCTGTTCTTACCCGTATCCTGATTGGTGCTAAAAAGTTCACCCAAATCAATGCGCTTCAGCAACTCATCCTATCGTACCCATCCAAGACATCACACGACTCCATGGTCTTCCTCGTCCGAGTTCTTGCCAAATCCGGTCA...

Protein

Download Protein FASTA

910 aa · LXL04_019576|LXL04_019576|OH1004|PROTEIN

MRELTKALINNTNNPELAWQIFKRIASNPSFPPDAFNESLSVLTRILIGAKKFTQINALQQLILSYPSKTSHDSMVFLVRVLAKSGHVSLAISQLQAIRTHHPNKPLSISLYNLLIRSSLQHNLPSCVRLLYEDMIVSKVPPETYTFNLLIGGLCDSNCLDDARKVFDKMPERECIPNEFTFGILVRGYCRAGRTSQGLELLEVMRSMNLLPNLVIYNTLVSAFCKEGKTNEAEMLVDMIREDGLVPNIVTFNSRISALC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019576
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019576
LocationChr04:34371081-34374232 (+)
DescriptionSimilar to At2g17140: Pentatricopeptide repeat-containing protein At2g17140
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17140 Pentatricopeptide repeat-containing protein At2g17140. No verified direct reference in this release
At5g65560 Pentatricopeptide repeat-containing protein At5g65560. No verified direct reference in this release
At1g09900 Pentatricopeptide repeat-containing protein At1g09900. No verified direct reference in this release
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019576 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G09900
ath:AT2G17140
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.822
Rank 1 · LXL04_019576 · OH-1004
Plastid0.086
Rank 2 · LXL04_019576 · OH-1004
Nucleus0.065
Rank 3 · LXL04_019576 · OH-1004
Cytoplasm0.036
Rank 4 · LXL04_019576 · OH-1004
Cell membrane0.014
Rank 5 · LXL04_019576 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2109-156 aa
PF17177.11PPR_long131-235 aa
PF12854.14PPR_1140-170 aa
PF13041.13PPR_2142-191 aa
PF01535.27PPR145-175 aa
PF23276.3TPR_24164-274 aa
PF12854.14PPR_1174-206 aa
PF01535.27PPR180-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019576PF13041.13PPR_21091563.2e-151492.1
LXL04_019576PF17177.11PPR_long1312351.7e-29103.4
LXL04_019576PF12854.14PPR_11401705.6e-135439.4
LXL04_019576PF13041.13PPR_21421913.2e-151492.1
LXL04_019576PF01535.27PPR1451752.4e-108347.8
LXL04_019576PF23276.3TPR_241642743.8e-38131.1
LXL04_019576PF12854.14PPR_11742065.6e-135439.4
LXL04_019576PF01535.27PPR1802092.4e-108347.8
LXL04_019576PF13812.13PPR_32012592.2e-59198.1
LXL04_019576PF12854.14PPR_12092385.6e-135439.4
LXL04_019576PF13041.13PPR_22122613.2e-151492.1
LXL04_019576PF01535.27PPR2152452.4e-108347.8
LXL04_019576PF12854.14PPR_12432765.6e-135439.4
LXL04_019576PF13041.13PPR_22472763.2e-151492.1
LXL04_019576PF01535.27PPR2502772.4e-108347.8
LXL04_019576PF12854.14PPR_12853155.6e-135439.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WPZ6Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g1714051.034%Swiss-Protstrong database homology
Q9LSL9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6556030.657%Swiss-Protmoderate database homology
Q3EDF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0990032.251%Swiss-Protmoderate database homology
Q9FMF6Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g64320, mitochondrial30.412%Swiss-Protmoderate database homology
Q0WKV3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12300, mitochondrial30.545%Swiss-Protmoderate database homology

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