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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019411
Reference: OH-1004 Chr: Chr04 Coordinates: 30709385-30711401 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1692 bp · LXL04_019411|LXL04_019411|OH1004|cDNA

ATGGAATCTTCGGCAAAATCAGCAGATGAAGTGGTGGAACAGATAATGAGAATTCACAGATCTCTTCCTCCAAGACCTGGAATTGAAGATGTTGAAGGTGCACAAATACTGATCCGAAATGCAGATAGCGAACTTCAGTCACGTCTGGAGTCCATTTCTAacctaaaaaaacaaaaaggCGTTCCTGACGAACTATTCAATGTGTTGGTAGAGATGCAAAAGCATTTAGCCAATTTCCACGCCATGGAACAAAAGAGGGA...

CDS

Download CDS FASTA

1692 bp · LXL04_019411|LXL04_019411|OH1004|CDS

ATGGAATCTTCGGCAAAATCAGCAGATGAAGTGGTGGAACAGATAATGAGAATTCACAGATCTCTTCCTCCAAGACCTGGAATTGAAGATGTTGAAGGTGCACAAATACTGATCCGAAATGCAGATAGCGAACTTCAGTCACGTCTGGAGTCCATTTCTAACCTAAAAAAACAAAAAGGCGTTCCTGACGAACTATTCAATGTGTTGGTAGAGATGCAAAAGCATTTAGCCAATTTCCACGCCATGGAACAAAAGAGGGA...

Protein

Download Protein FASTA

563 aa · LXL04_019411|LXL04_019411|OH1004|PROTEIN

MESSAKSADEVVEQIMRIHRSLPPRPGIEDVEGAQILIRNADSELQSRLESISNLKKQKGVPDELFNVLVEMQKHLANFHAMEQKREAIKLLDLENYHILFDEMIQRASKCVVPNGSDNNNNNTQSVSSMPITLSPLTTPASYSGVNLTASSANTVKTSNLFTRDDSYVNKLESTTFGDGIRRVMRSSDTSSRPMIVDSTLKPVITSGQDGDKLTLIKLASLIEVSSKKGAKDLDLCNKLMDQIEWLPDSIGKLSTLITL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019411
TK1151 IDTkA05G049820
OH-1004 IDLXL04_019411
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019411
LocationChr04:30709385-30711401 (-)
DescriptionSimilar to PIRL4: Plant intracellular Ras-group-related LRR protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g35470 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
At2g17440 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
At3g26500 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0511700 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Os10g0572300 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019411 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT2G17440
ath:AT3G26500
ath:AT4G35470
dosa:Os08g0511700
dosa:Os10g0572300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.382
Rank 1 · LXL04_019411 · OH-1004
Cytoplasm0.313
Rank 2 · LXL04_019411 · OH-1004
Nucleus0.252
Rank 3 · LXL04_019411 · OH-1004
Golgi apparatus0.081
Rank 4 · LXL04_019411 · OH-1004
Lysosome / Vacuole0.077
Rank 5 · LXL04_019411 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_8235-290 aa
PF23598.2LRR_14243-287 aa
PF12799.14LRR_4256-294 aa
PF13855.13LRR_8279-336 aa
PF23598.2LRR_14283-331 aa
PF12799.14LRR_4302-336 aa
PF23598.2LRR_14320-435 aa
PF13855.13LRR_8325-382 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019411PF13855.13LRR_82352906.6e-30103.4
LXL04_019411PF23598.2LRR_142432873.3e-36125.5
LXL04_019411PF12799.14LRR_42562941.2e-2589.7
LXL04_019411PF13855.13LRR_82793366.6e-30103.4
LXL04_019411PF23598.2LRR_142833313.3e-36125.5
LXL04_019411PF12799.14LRR_43023361.2e-2589.7
LXL04_019411PF23598.2LRR_143204353.3e-36125.5
LXL04_019411PF13855.13LRR_83253826.6e-30103.4
LXL04_019411PF12799.14LRR_43253631.2e-2589.7
LXL04_019411PF13855.13LRR_83904286.6e-30103.4
LXL04_019411PF13855.13LRR_83944496.6e-30103.4
LXL04_019411PF12799.14LRR_43944311.2e-2589.7
LXL04_019411PF13855.13LRR_84404996.6e-30103.4
LXL04_019411PF23598.2LRR_144534963.3e-36125.5
LXL04_019411PF12799.14LRR_44654981.2e-2589.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVW8Arabidopsis thalianaPlant intracellular Ras-group-related LRR protein 458.140%Swiss-Protstrong database homology
Q5G5E0Arabidopsis thalianaPlant intracellular Ras-group-related LRR protein 556.410%Swiss-Protstrong database homology
Q9LRV8Arabidopsis thalianaPlant intracellular Ras-group-related LRR protein 239.919%Swiss-Protweak database homology
Q6Z8P4Oryza sativa subsp. japonicaPlant intracellular Ras-group-related LRR protein 451.681%Swiss-Protstrong database homology
Q8S7M7Oryza sativa subsp. japonicaPlant intracellular Ras-group-related LRR protein 545.115%Swiss-Protmoderate database homology

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