LXL04_019388 | RubberDandelionOmics

Gene overview

LXL04_019388

Reference: OH-1004 Chr: Chr04 Coordinates: 30245047-30247477 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

537 bp · LXL04_019388|LXL04_019388|OH1004|cDNA

ATGGAAGAAACCCTTGAAGATCATGCCAAATCATTTACAGCTATATACATATTCTTCATCGCAACCGCTTTTCAGTTCTGTGACAAGCTCTTAGCACTGAAGAAGAGGAAAGCTTCCATGAGTAAGAGGGATCTTCAACTGCGCATCGAGATCAAGAGACTGTTGAAAGAGGCGGCCTCTTTATCACAACCTTCAACATTTGCTCAAGCTGCAAAACTTAGGAGAACAGCAGCAGCCAAGGAGAAAGAACTTGCAAAAAG...

CDS

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537 bp · LXL04_019388|LXL04_019388|OH1004|CDS

ATGGAAGAAACCCTTGAAGATCATGCCAAATCATTTACAGCTATATACATATTCTTCATCGCAACCGCTTTTCAGTTCTGTGACAAGCTCTTAGCACTGAAGAAGAGGAAAGCTTCCATGAGTAAGAGGGATCTTCAACTGCGCATCGAGATCAAGAGACTGTTGAAAGAGGCGGCCTCTTTATCACAACCTTCAACATTTGCTCAAGCTGCAAAACTTAGGAGAACAGCAGCAGCCAAGGAGAAAGAACTTGCAAAAAG...

Protein

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178 aa · LXL04_019388|LXL04_019388|OH1004|PROTEIN

MEETLEDHAKSFTAIYIFFIATAFQFCDKLLALKKRKASMSKRDLQLRIEIKRLLKEAASLSQPSTFAQAAKLRRTAAAKEKELAKSQESLTRDMKTSFGSYERLLMISKIVVYAALSLWLWGVPVATISKELVQPFGWFLSWTGGSYGDNVMVGIVPWIIMSNKVGRYFVKKVFKLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019388`
TK1151 ID	TkA05G048550
OH-1004 ID	LXL04_019388
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019388

Location Chr04:30245047-30247477 (+)

Description Similar to GET1: Protein GET1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16444`	Required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019388 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0048767 root hair elongation Biological Process

GO:0071816 tail-anchored membrane protein insertion into ER membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0043529 GET complex Cellular Component

KEGG gene cross-reference

ath:AT4G16444

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.637

Rank 1 · LXL04_019388 · OH-1004

Peroxisome0.108

Rank 2 · LXL04_019388 · OH-1004

Nucleus0.090

Rank 3 · LXL04_019388 · OH-1004

Mitochondrion0.083

Rank 4 · LXL04_019388 · OH-1004

Cytoplasm0.071

Rank 5 · LXL04_019388 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04420.20CHD521-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019388	`PF04420.20`	CHD5	21	163	7.3e-12	46.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q1H5D2`	Arabidopsis thaliana	Protein GET1	52.318%	Swiss-Prot	strong database homology

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