LXL04_019185 | RubberDandelionOmics

Gene overview

LXL04_019185

Reference: OH-1004 Chr: Chr04 Coordinates: 25720210-25729075 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2019 bp · LXL04_019185|LXL04_019185|OH1004|cDNA

atgaggaagaagaagctAGTGGTGGGGTCATGGGATGTGAAAAAGAGTGTTAAGTCTAGTGTGATGATTATGTTGATGATTGGAGCTTTAGTCACCATAGTTTTCTATTATGTCAACATCGACCATGAAGGAGAAAGTGGAGTAGTCTACGATACCTCTGTTTACGATTCATTAGAAGCAGGGTGTGATTTGTTCTCTGGGAAATGGGTTCATGATAACGACTCATATCCTCTCTATAAAGACGTGGATTGCCCCTATCT...

CDS

Download CDS FASTA

2019 bp · LXL04_019185|LXL04_019185|OH1004|CDS

ATGAGGAAGAAGAAGCTAGTGGTGGGGTCATGGGATGTGAAAAAGAGTGTTAAGTCTAGTGTGATGATTATGTTGATGATTGGAGCTTTAGTCACCATAGTTTTCTATTATGTCAACATCGACCATGAAGGAGAAAGTGGAGTAGTCTACGATACCTCTGTTTACGATTCATTAGAAGCAGGGTGTGATTTGTTCTCTGGGAAATGGGTTCATGATAACGACTCATATCCTCTCTATAAAGACGTGGATTGCCCCTATCT...

Protein

Download Protein FASTA

672 aa · LXL04_019185|LXL04_019185|OH1004|PROTEIN

MRKKKLVVGSWDVKKSVKSSVMIMLMIGALVTIVFYYVNIDHEGESGVVYDTSVYDSLEAGCDLFSGKWVHDNDSYPLYKDVDCPYLFGDFACDRYGRMDSNYQQWRWQPHACNLPRFDAKEVLERLRGKRVIFVGDSVNRNQWASMVCMLQLAIPLGRKKMEKVHGVSLFTFKAFDYNVSIDFYWAPLLVESNSDHPSKHRTNERIVRINSIEKHAKNWINADVLVFNSYLWWRLPTVKIQTGSAEYNIVDNHNGYQMV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019185`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019185

Location Chr04:25720210-25729075 (+)

Description Similar to TBL34: Protein trichome birefringence-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38320`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g01620`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0817500`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Biochemical characterization of rice xylan O-acetyltransferases.2018 · DOI: 10.1007/s00425-018-2882-1
`Os11g0107000`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618
`Os12g0106300`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019185 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38320

ath:AT5G01620

dosa:Os03g0817500

dosa:Os11g0107000

osa:4349561

osa:4351267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.326

Rank 1 · LXL04_019185 · OH-1004

Endoplasmic reticulum0.211

Rank 2 · LXL04_019185 · OH-1004

Nucleus0.147

Rank 3 · LXL04_019185 · OH-1004

Plastid0.104

Rank 4 · LXL04_019185 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_019185 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N61-114 aa

PF13839.13PC-Esterase115-344 aa

PF12353.14eIF3g413-540 aa

PF00076.29RRM_1593-659 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019185	`PF14416.12`	PMR5N	61	114	3e-21	76.2
LXL04_019185	`PF13839.13`	PC-Esterase	115	344	8.9e-57	193.9
LXL04_019185	`PF12353.14`	eIF3g	413	540	7.8e-33	114.2
LXL04_019185	`PF00076.29`	RRM_1	593	659	1.7e-17	63.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80919`	Arabidopsis thaliana	Protein trichome birefringence-like 34	50.171%	Swiss-Prot	weak database homology
`Q8RXQ1`	Arabidopsis thaliana	Protein trichome birefringence-like 35	46.786%	Swiss-Prot	weak database homology
`Q84TV3`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 14	44.409%	Swiss-Prot	weak database homology
`Q2RBL8`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 12	45.667%	Swiss-Prot	weak database homology
`Q2QYU2`	Oryza sativa subsp. japonica	Xylan O-acetyltransferase 13	45.333%	Swiss-Prot	weak database homology

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