LXL04_019162 | RubberDandelionOmics

Gene overview

LXL04_019162

Reference: OH-1004 Chr: Chr04 Coordinates: 25102457-25103439 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

429 bp · LXL04_019162|LXL04_019162|OH1004|cDNA

ATGGAAGTCACAAATGTAAGAGTATCAACCGATTTCCGGTTGCGATGGTGGGAAGAAGGTTTAATGCTAAATTATGTTTTACAGAATGAGGAAGTGTTGATGATGATCTGTACAGAGCGATACCCATACGATGTTTCAAGTGTAGCTGCTATGTTATCAGTGGAAGGCACATTGCTTCCCGGAAGAAGCAAACACACAGACAAAAAGAGAAATCATCATGTTTCAGAACTTCCAGATGGTTCTGGTTGGGCTGATCACAA...

CDS

Download CDS FASTA

429 bp · LXL04_019162|LXL04_019162|OH1004|CDS

ATGGAAGTCACAAATGTAAGAGTATCAACCGATTTCCGGTTGCGATGGTGGGAAGAAGGTTTAATGCTAAATTATGTTTTACAGAATGAGGAAGTGTTGATGATGATCTGTACAGAGCGATACCCATACGATGTTTCAAGTGTAGCTGCTATGTTATCAGTGGAAGGCACATTGCTTCCCGGAAGAAGCAAACACACAGACAAAAAGAGAAATCATCATGTTTCAGAACTTCCAGATGGTTCTGGTTGGGCTGATCACAA...

Protein

Download Protein FASTA

142 aa · LXL04_019162|LXL04_019162|OH1004|PROTEIN

MEVTNVRVSTDFRLRWWEEGLMLNYVLQNEEVLMMICTERYPYDVSSVAAMLSVEGTLLPGRSKHTDKKRNHHVSELPDGSGWADHKTSYRMNLTILLSGLKIPTYRFSLEFDAKVPKTPFSTCSDLENSIIALLETFWPMY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019162`
TK1151 ID	TkA01G600670
OH-1004 ID	LXL04_019162
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	75.300
Protein coverage (%)	TK1151 54.601 / OH-1004 55.634 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019162

Location Chr04:25102457-25103439 (+)

Description Similar to At1g27900: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g27900`	May be involved in pre-mRNA splicing.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019162 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003724 RNA helicase activity Molecular Function

GO:0004386 helicase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT1G27900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.412

Rank 1 · LXL04_019162 · OH-1004

Nucleus0.402

Rank 2 · LXL04_019162 · OH-1004

Mitochondrion0.174

Rank 3 · LXL04_019162 · OH-1004

Cell membrane0.106

Rank 4 · LXL04_019162 · OH-1004

Endoplasmic reticulum0.071

Rank 5 · LXL04_019162 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93Y16`	Arabidopsis thaliana	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4	60.976%	Swiss-Prot	weak database homology

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