Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1053 bp · LXL04_018689|LXL04_018689|OH1004|cDNA
ATGGATAGGTACACGAAGGTGGAACAGAAGAAACCGGATATACCTATCAACGAGAATGAGATCAGAATCACTTCTCAGGGCTTGGTGCGCAACTACATCAGCTATGCTACTACTCTTCTTCAGGAGAGACGTGGGAAAGAAATTGTGTTGAAAGCAATGGGACAAGCAATCAGCAAGACAGTTACCATTGCAGAACATATCAAGAGAAACATTCCTAGATTGCATCAAGATACTCAAATCAGTTCAATTAGCATAACTGA...
1053 bp · LXL04_018689|LXL04_018689|OH1004|CDS
ATGGATAGGTACACGAAGGTGGAACAGAAGAAACCGGATATACCTATCAACGAGAATGAGATCAGAATCACTTCTCAGGGCTTGGTGCGCAACTACATCAGCTATGCTACTACTCTTCTTCAGGAGAGACGTGGGAAAGAAATTGTGTTGAAAGCAATGGGACAAGCAATCAGCAAGACAGTTACCATTGCAGAACATATCAAGAGAAACATTCCTAGATTGCATCAAGATACTCAAATCAGTTCAATTAGCATAACTGA...
Protein
Download Protein FASTA350 aa · LXL04_018689|LXL04_018689|OH1004|PROTEIN
MDRYTKVEQKKPDIPINENEIRITSQGLVRNYISYATTLLQERRGKEIVLKAMGQAISKTVTIAEHIKRNIPRLHQDTQISSISITDVWEPIEEGLFPVEMTRQVSMISITLSTKELNKNSPGYQAPLYVERPRPHYNNYQRQQQPRNTQQGYNAINEESYGGSYNGNRGRGQGGGRGGRGRGWNRGGGYGNQGGDGYRNYQGGGGGGGDGYRNYQGGGGGGGDGYRNYQSGGGGGYGNYQGGRGYRNYRGGRGYGNYQG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018689 |
|---|---|
| TK1151 ID | TkA08G078000 |
| OH-1004 ID | LXL04_018689 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 88.286 / OH-1004 88.286Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018689 |
|---|---|
| Location | Chr04:16675285-16678259 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001682 tRNA 5'-leader removal Biological Process GO:0006364 rRNA processing Biological Process GO:0006396 RNA processing Biological Process GO:0000172 ribonuclease MRP complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005655 nucleolar ribonuclease P complex Cellular Component GO:0005730 nucleolus Cellular Component GO:0030681 multimeric ribonuclease P complex Cellular Component GO:0003723 RNA binding Molecular Function GO:0004526 ribonuclease P activity Molecular Function GO:0033204 ribonuclease P RNA binding Molecular Function |
| KEGG gene cross-reference | bta:512203 hsa:138716 hsa:54913 mmu:69961 rno:315705 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01918.28Alba19-82 aaPF12328.14Rpp2041-110 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018689 | PF01918.28 | Alba | 19 | 82 | 7.3e-15 | 55.2 |
| LXL04_018689 | PF12328.14 | Rpp20 | 41 | 110 | 5e-06 | 27.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.